Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2482 ATGCAAACCCTTTCTTCTTCAACCATTCCAAACACACCCTTAACCTTGGATTCCGAAACCTTTGTTGCTCGCTTCACATTTTCCCCCAAGATGCAGATCTTCGCAAAGATCCAAGACAAGGAAGGAATTCCTCCGGACCAACAGCGTCTCATCTTCGCCGGAAAGCAGTTGGGAGACGGCCGCACTCTCGCCGACTACAACATCCAGAAGGAATCAACTCTCCATCTGGTCCTCCGTCTTCGCGGTGGCGCAAAGAAGCGTAAGAAGAAGACCTACACCAAGCCTAAGAAGATCAAGCATAAGCACAGGAAGGTGAAGCTTGCGGTTCTCCAGTTCTACAAGATGGATGATTCTGGAAAGGTGCAGAGGCTGAGGAAGGAGTGCCCTAATGCGGAGTGTGGTGCGGGGACTTTCATGGCGAATCATTTTGATCGCCATTACTGTGAAATGTTTGTTGTTGTTGGAAACTGTTGTTTTTTTACAGGTGGAACCACATCCGACGAAGATTCACGAAGAAAATATAAGTGCAGATGGAGGGACCTCGGACACTACGAACCCAACCGTCAACGGCGAAGAAGCTCAGAATCAATTTTGGCTACAACATTAACCGTCACCGCTGCAATATGCAAAGCAAAGTTCATCAGTTCTGCAGATCAGTTCCTTGCCAAAGGTTCTGGTTTAGTTGAAGGATTGAGGTTACCGGCTCCAGAGTTGATGGAAGTTATGGCGAGTTCGAAGAGCGAATCCAGTCACAAGGCGTTGACCGACACAACAGTGGCAAGATCAACACTACAATAG 798 0.4799 MQTLSSSTIPNTPLTLDSETFVARFTFSPKMQIFAKIQDKEGIPPDQQRLIFAGKQLGDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKMDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCEMFVVVGNCCFFTGGTTSDEDSRRKYKCRWRDLGHYEPNRQRRRSSESILATTLTVTAAICKAKFISSADQFLAKGSGLVEGLRLPAPELMEVMASSKSESSHKALTDTTVARSTLQ* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2482 265 ProSiteProfiles Ubiquitin domain profile. 36 83 IPR000626 GO:0005515
Psa2g2482 265 SMART ubq_7 12 79 IPR000626 GO:0005515
Psa2g2482 265 SMART Ribosomal_S27_2 109 160 IPR002906 GO:0003735|GO:0005840|GO:0006412
Psa2g2482 265 PANTHER UBIQUITIN 33 152 - -
Psa2g2482 265 PRINTS Ubiquitin signature 39 59 IPR019956 -
Psa2g2482 265 PRINTS Ubiquitin signature 60 81 IPR019956 -
Psa2g2482 265 SUPERFAMILY Zn-binding ribosomal proteins 107 148 IPR011332 GO:0006412
Psa2g2482 265 SUPERFAMILY Ubiquitin-like 35 100 IPR029071 -
Psa2g2482 265 Gene3D - 87 159 IPR038582 -
Psa2g2482 265 Pfam Ubiquitin family 35 81 IPR000626 GO:0005515
Psa2g2482 265 MobiDBLite consensus disorder prediction 244 265 - -
Psa2g2482 265 Pfam Ribosomal protein S27a 109 148 IPR002906 GO:0003735|GO:0005840|GO:0006412
Psa2g2482 265 Gene3D - 5 86 - -
Psa2g2482 265 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 33 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2482 Psa-Chr2 286669802 286670669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2482 35 148 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 90.351 8.10e-61 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2482 K02977 - csv:101218512 201.445