Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2446 ATGCATTTGTTTCACTCTCAAATCCATGATAACAATGGTGCTATCGTAAATCCTCCTATTCTTTCACCATATTCTTCTCCAATTCCTTATAACTCTAACAGTAACAGCCAAAAACAGTCAGAACCAGCTCCAATTTCTTCATCTGGAAACAAAATAAGTCCTGCAATTCTCTTCATCATAGTTATATTAGCTATTATATTTTTCATCCTAGGTTTTCTTCACTTGCTTGTTAGGTTTCTCATAAAGCATAGATCTTCTAGTTCTTCATCAATTTCTCAATCAAATAGGTTTCCTGAAATGTCTGAATCTGATGCATACCAAAGACAGTTGCAGCAGCTTTTCAATCTTCATGATTCAGGTTTGGATCAAGCATTCATTGACGCTCTTCCTGTTTTCATTTACAAAGAGATTATTGGTTTGAAAGAGCCTTTTGATTGTGCTGTTTGTTTATGTGAGTTTTTGGAACATGATAAGCTTAGATTGTTACCTAATTGTAATCATGCTTTTCATATTAACTGCATAGATACATGGTTATTGTCAAATTCAACGTGTCCTTTATGTAGAGGGACACTTTATGCACAAGGGTTTTCGTTCGAGAAAAATCCTGTTTTTGAGTTTGAAGATCAAAGGGATGAAGATTGTGTTATAGGTATTGGTTCAGTTAACAAGAATATGGAAAACCATATAATGAATGGGAAAAGGGTTTTTTCTGTTAGGCTTGGAAAGTTTAGAAGTTCAAATAATGCAGAAGGGGTTGGAAAAAGCCAAGGAGAGAGTAGTAACTGTAGTTTTGATGTTAGGAGATGCTATTCAATGGGATCTTTTCAGTATGTTGTTTGTGATTCAGAATTGCAAGTTGCTTTGAGACCTTCTAAAGGTGATGGAAGTATGAGACAATTGAAGGGAATTAGAGAAATTCAAGATGAGAGTTTTTCCAATGATGGAGATGTTGAAGGCAAGAAAATTAACATTGCAAGGAAAGGTGAAAGTTTTTCTGTTTCAAAGATTTGGCAATGGTCTAAGAAAGATAATAAGATACCAAGTTCATCAGATACACATTTTCATAATTGTGTTGTCAATGAAAGTTTGCCATGGATGAATAAAAGCTAG 1110 0.3423 MHLFHSQIHDNNGAIVNPPILSPYSSPIPYNSNSNSQKQSEPAPISSSGNKISPAILFIIVILAIIFFILGFLHLLVRFLIKHRSSSSSSISQSNRFPEMSESDAYQRQLQQLFNLHDSGLDQAFIDALPVFIYKEIIGLKEPFDCAVCLCEFLEHDKLRLLPNCNHAFHINCIDTWLLSNSTCPLCRGTLYAQGFSFEKNPVFEFEDQRDEDCVIGIGSVNKNMENHIMNGKRVFSVRLGKFRSSNNAEGVGKSQGESSNCSFDVRRCYSMGSFQYVVCDSELQVALRPSKGDGSMRQLKGIREIQDESFSNDGDVEGKKINIARKGESFSVSKIWQWSKKDNKIPSSSDTHFHNCVVNESLPWMNKS* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2446 369 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Psa2g2446 369 SUPERFAMILY RING/U-box 125 194 - -
Psa2g2446 369 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 365 - -
Psa2g2446 369 Pfam Ring finger domain 145 188 IPR001841 -
Psa2g2446 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 195 IPR013083 -
Psa2g2446 369 CDD RING-H2_PA-TM-RING 145 188 - -
Psa2g2446 369 SMART ring_2 146 187 IPR001841 -
Psa2g2446 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2446 Psa-Chr2 279785215 279787386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2446 45 350 C3H Transcription Factor Family AT2G18650 42.151 1.69e-57 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2446 - - gmx:100805154 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2446 2 279785215 279787386 Psa2g2446 2 279785215 279787386 ECH
Psa2g2446 2 279785215 279787386 Psa1g1376 1 92852542 92855179 ECH