Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2427 ATGATCCCAACAACAAACGGGTCGGGTCGTCGGGTATTCAATTTCCCGGCGGTTCATCCATATGCAAACATCGCTCTTTCCACTCTTCTCACTTCCCTCATCACTCTCTCCGAAGATATTTCCAATTTCCAACACAAATTCTTCTCTTCCAATAAACGAAACTCCAGAAACGCTATTCGTTTGGTTCATCTTCTCCAACCATTCCTTCATGATATCCGAGAAAATCACTCCAATCTTCCATCTCCGGCGACGCTTTGTTTCACAGAGCTTCATTTCATCTTCCAGAAGCTTCTATTCCTGATGGAAGATTCAACCAGAGAAGGTGCAAGGTTGTTTATGTTAATGGAGTCGGATCGGGTTGCAACAATGTTTCGGGTTTTCTTCCAATCCGTTGCAACTGCACTTGATGGTTTTCCTTTTGATGCTGTTGAGGTGTCTGTGGAAGCTAAAGAGGATGTTTTGTTGTTGATGAAGCAAGCGAGGGAGGGAAGGTTTGAATTTGAGGTTGAGGATGAGGTCGTAGTGATGTGTGTTATGAATGTCTTGAAGCTATTTGAGAAAAGGGCTGCTCCGGAAAAGTTTGATATGAAACGTGTTCTTGATTATATTGGGGTTGTGAAGTGGAGTGAGGTTAATAAAGAGGTGAAGTTTTTGGATGGTGAAATTGAGTTTGAGTGGTTGAATGAGAAAAGTAAAAAGGTGGGTTTTTTAAGTAGTTTGATGGGGTTTATGAGTTATTGTAGATGTATGGTGATGGAAATTGTGAACTTTGAAGAGGGGGAAAGCAGGATGAAAATTGATACAAGAGTAGAAACTGAAATGATTTTGAGTTGTGTAAACTCAGATGATTTTCGATGTCCAATCTCTTTGGAATTGATGAGTGATCCTGTCAATATACAAACAGGTCATACTTATGATCGTTCTTCAATTCTCAAATGGTTTAGAAGTGGAAATGCAATGTGTCCAAAGACGGGTAAAAGTCTTAGCAGCGTTGAATTGGTACCCAATTTGGTACTAGGGAAGTTGATTCAACAGCACTGCAATGTCAATGGCATTCCTTTTTCTGATTCGGGTCATCGGAATCGGGACATGACAAGGACAACGCAGCCTGGAAGTGAAGCTGCAGAGGGAGCAATGAAGCTCTTGGCTGGTTTTCTTTGTGGATGTCTTGACAACGGAAATGTGGAACAGAAGAGCCGTGCTGCATTTGAGGCAAGAGTTCTTACCAAAACAAGCATTTTTAGTAGGTCTTGTTTGGTAGAAGCTGGTTCAGTTCCTCTTTTGTTGTTGTTGTTGGCATCAAGTGATTCATCAGCACAAGAGAATGGTATTGCAGCCCTTTTAAACCTCTCAAAATACACCAAAAGTAGAAGTGAAATGGTTGAAAATTGGGGATTAGAAATGATTGTTGGTGTCTTAAACAAAGGGATAACGATCAAAGCTAAACAACACGCTGCAGCGGTGTTGTTTTACCTTGCTTCAAATGCCGACCATGGTAACTTAATCGGCAAAGAGCCAGAAGCAATTCCCTCATTGATCAGTCTCATCAAAGATGGCACTGATCGAAGTGTAAAGAATGGTTTGGTTGCAATTTTTGGCCTCCTAAAAAGCCATGAAAATCGCAAGAGGATACTTGCTGCTCAAGCAATTCCTTTGTTAGTTAACATCTTAAAAGCAAATGAAAAAGAAGACTTTGTCACAGACTCACTAGCAATTCTAGCAACTCTTGCAGAGAAAAGTGACGGAACAATGGAAATCCTTCGTTTCGGAGCTTTGCATGTAGCCGTTGAAGTTATGAGTCCTTCCTCCACTACTTCAAGATTAGGGAAAGAACATTGTGTGTCTTTGTTGCTTTCTCTATCAATGAATGGAGGAGAAAATGTGGTTGCTCATTTAGTGAAGAGTTCTTCTCTTATGGAATCTTTATATTCACAACTAAGTGAAGGAACTTCTAGAGCAGGCAAAAAGGCAAGTTCTCTTATAAGGGTCCTTCATGATTTTTATGAAAGGGGATCCTCTAACTACAAGACATCAGTTATTCCACGTGAACAATTCATTCATGTATGGTAA 2070 0.4048 MIPTTNGSGRRVFNFPAVHPYANIALSTLLTSLITLSEDISNFQHKFFSSNKRNSRNAIRLVHLLQPFLHDIRENHSNLPSPATLCFTELHFIFQKLLFLMEDSTREGARLFMLMESDRVATMFRVFFQSVATALDGFPFDAVEVSVEAKEDVLLLMKQAREGRFEFEVEDEVVVMCVMNVLKLFEKRAAPEKFDMKRVLDYIGVVKWSEVNKEVKFLDGEIEFEWLNEKSKKVGFLSSLMGFMSYCRCMVMEIVNFEEGESRMKIDTRVETEMILSCVNSDDFRCPISLELMSDPVNIQTGHTYDRSSILKWFRSGNAMCPKTGKSLSSVELVPNLVLGKLIQQHCNVNGIPFSDSGHRNRDMTRTTQPGSEAAEGAMKLLAGFLCGCLDNGNVEQKSRAAFEARVLTKTSIFSRSCLVEAGSVPLLLLLLASSDSSAQENGIAALLNLSKYTKSRSEMVENWGLEMIVGVLNKGITIKAKQHAAAVLFYLASNADHGNLIGKEPEAIPSLISLIKDGTDRSVKNGLVAIFGLLKSHENRKRILAAQAIPLLVNILKANEKEDFVTDSLAILATLAEKSDGTMEILRFGALHVAVEVMSPSSTTSRLGKEHCVSLLLSLSMNGGENVVAHLVKSSSLMESLYSQLSEGTSRAGKKASSLIRVLHDFYERGSSNYKTSVIPREQFIHVW* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2427 689 Gene3D - 369 676 IPR011989 -
Psa2g2427 689 SUPERFAMILY ARM repeat 385 664 IPR016024 -
Psa2g2427 689 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Psa2g2427 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 352 IPR013083 -
Psa2g2427 689 CDD RING-Ubox_PUB 284 326 IPR045210 -
Psa2g2427 689 Pfam U-box domain 282 346 IPR003613 GO:0004842|GO:0016567
Psa2g2427 689 PANTHER U BOX DOMAIN-CONTAINING 4 679 - -
Psa2g2427 689 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Psa2g2427 689 SUPERFAMILY RING/U-box 282 354 - -
Psa2g2427 689 SMART arm_5 411 452 IPR000225 GO:0005515
Psa2g2427 689 SMART arm_5 453 494 IPR000225 GO:0005515
Psa2g2427 689 SMART arm_5 537 578 IPR000225 GO:0005515
Psa2g2427 689 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 18 4 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2427 Psa-Chr2 278138307 278140979 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2427 1 689 U-box Gene Family AT1G10560 42.254 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2427 - - gmx:100795816 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2427 2 278138307 278140979 Psa2g2427 2 278138307 278140979 ECH