Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2399 ATGTCAACACTAAACCATCTTTTCGATCTTCCAGAACAGATATGTTACGTACAGTGCGGATTCTGCAACACCATTTTAATGGTAAGTGTTCCATGCAGCAGTTTATCAACGGTGGTGACAGTAAGATGTGGTCACTGCACAAGTCTCTTATCTGTTAATATGATGAAAGCTTCTTTTGTTCCTTTGCACCTTTTAGCATCTCTTACTCATCTCGAGATGCCAAAAGAAAGTAATAGTCCAGATGAAGATACAAACAAGGGTTTGATAACTTTTTCTGATTGTGAAGATGATGATATAATTCCAATCACCAACGTAGTCAATAAACCACCAGAGAAGAGACAAAGAACACCATCAGCTTATAATCGATTCATCAAAGAAGAGATTAGAAGGCTAAAATCTCAACACCCTGATATGGCTCACAAGGAAGCTTTCAGCACAGCTGCAAAAAATTGGGCCAATTGCCCTCAAATACAGTTCAAAGGAGATGAGGAGAGTTGTAACCTGACAGATCAGCTTGTGGATCTTGACTCTCAAGTGGACCCTAATGATGCTGAGGTGAATATTGAAGAAGAACCAGGTTTTCGTGGAAGAAAGGTAGCAAGAAATTCCATCTTGGAAAGGACACCATTTGAGTGA 636 0.3962 MSTLNHLFDLPEQICYVQCGFCNTILMVSVPCSSLSTVVTVRCGHCTSLLSVNMMKASFVPLHLLASLTHLEMPKESNSPDEDTNKGLITFSDCEDDDIIPITNVVNKPPEKRQRTPSAYNRFIKEEIRRLKSQHPDMAHKEAFSTAAKNWANCPQIQFKGDEESCNLTDQLVDLDSQVDPNDAEVNIEEEPGFRGRKVARNSILERTPFE* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2399 211 Gene3D High mobility group box domain 105 163 IPR036910 -
Psa2g2399 211 PANTHER AXIAL REGULATOR YABBY 4 1 171 - -
Psa2g2399 211 PANTHER PROTEIN YABBY 6-RELATED 1 171 IPR006780 GO:0007275
Psa2g2399 211 Pfam YABBY protein 11 160 IPR006780 GO:0007275
Psa2g2399 211 SUPERFAMILY HMG-box 103 155 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2399 Psa-Chr2 275119381 275121498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2399 2 211 C2C2-YABBY Transcription Factor Family AT1G23420 53.540 1.98e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Psa2g2399 YABBY 2e-61 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2399 K25796 - gmx:100804172 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g2399 2 275119381 275121498 Psa2g2399 2 275119381 275121498 ECH