Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2380 ATGTCAACACTAAACCATCTTTTTGATCTTCCAGAACAGATATATTACGTACAATGTGGATTCTGCAACACCATTTTAATGGTAAGTGTTCCATGCAGCAGTTTATCAATGGTGGTGACAGTAAGATGTGGTCACTGCACAAGTCTCTTATCTGTAAATATGATGAAAGCTTCTTTTGTTCCTTTGCACCTTTTAGCATCTCTTACTCATCTCGAGATGCCAAAAGAAAGTAATAGTCCAGATGAAGATACAAACAAGGGTTTCATAACTTTTTCTGATTGTGAAGATGATGATATAATTCCAATCACCAACGTAGTCAATAAACCACCAGAGAAGAGACAAAGAACACCATCAGCTTATAATCGATTCATCAAAGAAGAGATTAGAAGGCTAAAATCTCAACACCCTGATATGGCTCACAAGGAAGCTTTCAGCACAGCTGCAAAAAATTGGGCCAATTGCCCTCAATTACAGTTCAAAGGAGATGAAGAGAGTTGTAACCTGACAGATCAGCTTGTGGATCTTGACTCTCAAGTGGACCCTAATGATGCTGAGGTGAATATTGAAGAAGAACCAGGTTTTCGTGGAAGAAAGGTAGCAAGAAATTCCATATTGGAAAGGACACCATTTGAGTGA 636 0.3852 MSTLNHLFDLPEQIYYVQCGFCNTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASLTHLEMPKESNSPDEDTNKGFITFSDCEDDDIIPITNVVNKPPEKRQRTPSAYNRFIKEEIRRLKSQHPDMAHKEAFSTAAKNWANCPQLQFKGDEESCNLTDQLVDLDSQVDPNDAEVNIEEEPGFRGRKVARNSILERTPFE* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2380 211 Pfam YABBY protein 11 160 IPR006780 GO:0007275
Psa2g2380 211 Gene3D High mobility group box domain 105 164 IPR036910 -
Psa2g2380 211 PANTHER AXIAL REGULATOR YABBY 4 1 171 - -
Psa2g2380 211 PANTHER PROTEIN YABBY 6-RELATED 1 171 IPR006780 GO:0007275
Psa2g2380 211 SUPERFAMILY HMG-box 103 155 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2380 Psa-Chr2 273719864 273722240 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2380 2 211 C2C2-YABBY Transcription Factor Family AT1G23420 53.097 3.62e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Psa2g2380 YABBY 3.4e-59 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2380 K25796 - gmx:100804172 319.316