Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2349 ATGGAGGTTTGTAATTTGGTTTTCTGGATTCTTGGTTTGTTTCTTCATGTTCTGATGAAGATTTCTTCTGCTACTCTATCTCCTTCTGGCATAAACTATGAAGTTGTGGCTTTGATGGCTATAAAAAATGATTTGAATGATCCTCACAATGTTTTGGAGAGTTGGGATATAAATTCTGTTGATCCATGTAGTTGGAGGATGATTACTTGTACTCCAGATGGCTCAGTTTCTGCACTGGGATTGCCTAGTCAGAACGTGTCTGGTACACTATCTCCTAAAATTGGAAACCTTACTAACTTGCAATCTGTGTTACTTCAGAATAATGTTATTTCTGGTCATATTCCTTCGGCGATAGGAAGCTTGGAAAAGCTTCAGACACTCGATCTCTCCAACAATGAATTTAGTGGCGAGATGCCGAGTTCTTTGGGAGGTCTCAAGAACTTGAATTATTTGCGGTTAAATAATAACAGTCTTACAGGAGCCTGCCCTCCGTCTCTTAGCAACATCGAAAGCCTTACACTTGTGGACCTGTCCTACAACAATTTGAGTGGTTCGTTACCGAGAATATCGGCAAGAACATTGAAGATAGTAGGCAACCCGTTAGTTTGTCCAAAAGAAAACAATTGTACTACGGTTTTGCCCGAGCCACTTTCGTTCCCACCAGGGGCTTTGGAAGCCAAACCAGATAATGGTAAAAAAGGTCATCATGTAGCACTTGCTTTCGGTGCAAGTTTTGGTGCTGCGTTTGTTATTGTTACTATAGTCGGGCTTCTTGTTTGGTGGCGGTATAGACACAACCAACAGATATTCTTTGATATTAACGAGCATTACGATCCAGAAGTGCGCCTCGGTCATTTAAAAAGATATTCGTTCAAAGAGCTTCGGACTGCAACTGACCATTTCAACTCAAAGAACATTCTAGGAAGAGGCGGCTTTGGAATAGTTTACAAAGCCTGCTTGAACGACGGATCCGTTGTGGCTGTTAAACGGCTAAAAGACTATAATGCAGCTGGCGGTGAGATCCAATTTCAAACGGAAGTTGAGACAATAAGTTTGGCTGTTCACCGGAATCTTCTGAGGCTTCGAGGGTTTTGCAGTACTCAAAACGAAAGACTCCTAGTTTATCCATATATGTCTAATGGAAGTGTAGCCTCTAGATTAAAAGATCATACAAATGGTCGACCGGCTTTGGATTGGACGAGGCGAAAGAGAATAGCTTTAGGCACAGCAAGAGGGTTGGTTTATTTGCACGAACAATGTGACCCGAAAATTATCCATCGAGATGTTAAAGCAGCCAATATATTGCTAGATGAAGACTTTGAAGCAGTTGTTGGTGATTTCGGTTTAGCTAAGCTTTTGGATCATAGAGATACTCATGTAACCACTGCAGTGCGTGGCACCATTGGTCATATCGCTCCGGAGTACCTATCCACCGGCCAGTCATCAGAAAAGACCGACGTGTTTGGATATGGAATTTTGTTGCTTGAGCTGATCACAGGTCATAAAGCTCTAGATTTCGGTCGAGCAGCAAACCAGAAAGGTGTAATGCTTGATTGGGTTAAGAAGCTACACTTAGAAGGAAAATTAAGTCAAATGGTAGATAAAGATCTGAAAGGAAACTTTGACATAGTTGAATTGGGAGAGATGGTTCAAGTAGCACTTTTATGTACGCAGTTTAATCCGTCGCACCGTCCGAAGATGTCAGAAGTGTTAAAGATGTTGGAAGGGGATGGCTTAGCCGAGAGATGGGAGGCATCACAGAGGATCGAAACACCGCGGTTTCGGTTTTGCGAGAATCCGCCTCAAAGATATTCAGATTTTATAGAAGAATCATCACTGATAGTAGAAGCAATGGAGCTTTCTGGCCCTAGGTGA 1875 0.4224 MEVCNLVFWILGLFLHVLMKISSATLSPSGINYEVVALMAIKNDLNDPHNVLESWDINSVDPCSWRMITCTPDGSVSALGLPSQNVSGTLSPKIGNLTNLQSVLLQNNVISGHIPSAIGSLEKLQTLDLSNNEFSGEMPSSLGGLKNLNYLRLNNNSLTGACPPSLSNIESLTLVDLSYNNLSGSLPRISARTLKIVGNPLVCPKENNCTTVLPEPLSFPPGALEAKPDNGKKGHHVALAFGASFGAAFVIVTIVGLLVWWRYRHNQQIFFDINEHYDPEVRLGHLKRYSFKELRTATDHFNSKNILGRGGFGIVYKACLNDGSVVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLRGFCSTQNERLLVYPYMSNGSVASRLKDHTNGRPALDWTRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDTHVTTAVRGTIGHIAPEYLSTGQSSEKTDVFGYGILLLELITGHKALDFGRAANQKGVMLDWVKKLHLEGKLSQMVDKDLKGNFDIVELGEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAERWEASQRIETPRFRFCENPPQRYSDFIEESSLIVEAMELSGPR* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2349 624 PANTHER PROTEIN NSP-INTERACTING KINASE 3 5 624 - -
Psa2g2349 624 SMART serkin_6 301 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g2349 624 Pfam Protein kinase domain 302 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g2349 624 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Psa2g2349 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 624 - -
Psa2g2349 624 Gene3D Ribonuclease Inhibitor 31 211 IPR032675 -
Psa2g2349 624 ProSiteProfiles Protein kinase domain profile. 301 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g2349 624 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Psa2g2349 624 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Psa2g2349 624 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Psa2g2349 624 SUPERFAMILY L domain-like 32 204 - -
Psa2g2349 624 SUPERFAMILY Protein kinase-like (PK-like) 278 575 IPR011009 -
Psa2g2349 624 Gene3D Transferase(Phosphotransferase) domain 1 378 593 - -
Psa2g2349 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2349 Psa-Chr2 269545360 269550041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2349 67 624 Receptor kinase-like Gene Family AT1G60800 74.221 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Psa2g2349 Pkinase 5.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2349 - - gmx:100784164 1112.83