Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2187 ATGAAAGCAGGAAAAGTGAACCACGAAGAAGACGAGTACGATGAGGAAGACTTCAATTCTTCAAAAAAACAAGGCTCTTCCTCTGCCCCTAACAACAACAAAGATGGGAAAGCTACTGATAAAGCTAGTGTAATAAGATCGAAACATTCTGTAACCGAGCAGCGAAGAAGAAGCAAGATAAATGAGAGATTCCAAATATTGAGGGATCTCATACCTCAATGTGATCAAAAGAGGGACACAGCGTCGTTCTTATTAGAGGTGATCGAGTATGTTCAGTACTTACAGGAGAAGGTACAAAAATATGAAGGCTCATATCAAGGTTGGAGTCAAGAGCCGTCGAAGTTGATGCCATGGAGAAATAGCCATTGGCGTGTCCAAAACTTTGTTGGTCAACCTCCAGCGCTAAAGAATGGTTCAGGTCCGGCATTACCATTTCCCGGAAAGTATGATGAAAGCAACATTAGTATCTCTCCAACTATGCTTAGTGGTGCTCAGAATATGATGGATCATGATCTGAGTCGGGATATTGTCGGAAAAACAGCGGAGAGGCAACCTGATTTAGCAAGCAAGGGAATTCCTCTGCCCGTACTACCTATGCATGCAAACATGTCTGTTCCTGTCAGAAGTGATGGTGTGTTTTCCCATCCTCTTCAGGGAACTGTTTCCGATGCGCAATCATCTGAGTGTCCCGCAACTAGTGAACAACTGAATCAGCAGGATGAACTTACAATTGAAGGAGGGACAGTCAGCATCTCGAGTGTATACTCCCAAGAGTTGCTGAACAATCTAACTCAGGCGCTACAGAGTGCTGGGTTAGATCTCTCAAAGGCCAACATTTCGGTGCAAATTGATCTTGGGAAGCGTGCAAACAAAGAGGCAAGCGGCACAACCTCTTCTCCGAAGGATCATGATAACCCTCTTTCTGGCGACCAAAGCATTGCACATTTTAGAGATGTTGACATTAGAGAAGACTCGAGTCAAGCTCAGAAAAGAATGAAAACTTACAAGTGA 1011 0.4392 MKAGKVNHEEDEYDEEDFNSSKKQGSSSAPNNNKDGKATDKASVIRSKHSVTEQRRRSKINERFQILRDLIPQCDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWSQEPSKLMPWRNSHWRVQNFVGQPPALKNGSGPALPFPGKYDESNISISPTMLSGAQNMMDHDLSRDIVGKTAERQPDLASKGIPLPVLPMHANMSVPVRSDGVFSHPLQGTVSDAQSSECPATSEQLNQQDELTIEGGTVSISSVYSQELLNNLTQALQSAGLDLSKANISVQIDLGKRANKEASGTTSSPKDHDNPLSGDQSIAHFRDVDIREDSSQAQKRMKTYK* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2187 336 MobiDBLite consensus disorder prediction 39 57 - -
Psa2g2187 336 MobiDBLite consensus disorder prediction 1 57 - -
Psa2g2187 336 MobiDBLite consensus disorder prediction 291 306 - -
Psa2g2187 336 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 334 IPR044295 GO:0003700|GO:0006351|GO:0046983
Psa2g2187 336 MobiDBLite consensus disorder prediction 315 330 - -
Psa2g2187 336 SMART finulus 50 100 IPR011598 GO:0046983
Psa2g2187 336 CDD bHLH_AtBIM_like 43 119 - -
Psa2g2187 336 PANTHER TRANSCRIPTION FACTOR BIM2 1 334 - -
Psa2g2187 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 116 IPR036638 GO:0046983
Psa2g2187 336 Gene3D - 40 115 IPR036638 GO:0046983
Psa2g2187 336 MobiDBLite consensus disorder prediction 22 38 - -
Psa2g2187 336 MobiDBLite consensus disorder prediction 289 336 - -
Psa2g2187 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Psa2g2187 336 Pfam Helix-loop-helix DNA-binding domain 46 95 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2187 Psa-Chr2 237063577 237067505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2187 1 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 56.213 6.73e-123 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa2g2187 HLH 2.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2187 - - gmx:100816055 536.184