Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2154 ATGATCAAAACTATGGCTTATTCTCTAATTCAACTTCTTTCACTTCTTCTCCCTCTTCTATCATCTTCATTTATAACAACTGTGTTCACCTTTGAAGTTTCAATAAAAAACACTTACATAGAACCTTTTAAATGCTCTACAAAGATCAAAACATGCAATGCATCAATCTACCACATAAACTACAATCACAGCATAGAACAACTAGCCGATTCTTACTCCGTCGATCCTTCCGAAATCAAACCGATATTTCGTAGCACAAAGCAAGATTACCTTATACAAGTACCTTGTTCTTGCCAAGACACCATTGACCTTAACGGTTATTTCTATGACACAAACTACAAAGTGAGTCATAATGAAAGTTTTTTGAATATTAACAATATTGTTTATAGTGGTCAAACTTGGCATGTCAATGAAGATTTGGTTGCAAATGAGAATGTGACGATACATATTCCTTGTGGATGTTCAGAACTTGAGTCACAAATTGTTGTTACATATACTGTTCAGCAAGGTGATACACCAACATCAATTTCTCTTTTGTTAAATGCTAATCTTGATGGCATGGTGAAAATGAATGAAATTTTGGGTCCTAACCCAACATTCATTGATATTGGTTGGGTTTTATATGTTCCCAAGGAATTAAAAGGGTCACCACTTTCCATTGAAAAAGAAAAGAAACACAAGTGGGTGATAATTATTGGTATCTTAGTGAGTGTGACATTACTTTCGGTTATTAGCTTGATGATTTTCATTCTCAGAAGAAATAAAGGCTATGGAAGTAGCAAAAATGATCCAAAAACTTTCTCTAAAAGATCGCTTGCCAATAGAACCATTTCTCTAAGGAATCAAGAATTTCATAAAGAATATATGGAAGATGCAACTCAATTCGATTCCGAAAGACCAGTGATCTATGATTTTGAGGAGATTGAAGAAGCTACAAATAACTTTGATGAAACTAGAAGGATTGGAGTTGGTGGATATGGCACAGTCTATTTTGGAATGCTAGAAGATAAAGAAGTTGCTGTGAAGAAAATGAAGTCTAACAAATCCAAAGAGTTCTATGCAGAACTCAAAGCCTTATGCAAGATCCATCATATTAACATTGTTGAATTGTTGGGATATGCAAGTGGAGATGATCATCTTTATTTGGTGTATGAGTATGTTCCTAATGGATCTCTAAGTGAACACCTTCATGATCCATTATTAAAAGGTCACCAGCCTCTTTCTTGGTGTGCTAGAGCTCAAATTGCACTTGATTCAGCAAAAGGTATTGAATACATACACGATTACACAAAAGCGCGATATGTGCACCGTGATATAAAAACTTGTAATATCCTTCTTGATGCAAAGCTCAGAGCAAAGGTAGCGGATTTCGGGCTTGCAAAGCTCGTGGAACGAACAAACGATGAAGAATTTTTAGCAACAAGACTTGTTGGAACACCAGGCTATCTTCCACCTGAATCGGTGAAGGAGCTTCAAGTGACGATAAAAACTGATGTATTTGCATTTGGCGTGGTTCTGTCTGAGTTGATAACTGGGAAACGCGCATTGTTTCGTGACAACAAAGAAGCTAATAATATGAAATCACTTATTGCAGTTGTAAACAAAATATTTCAAGATGATGAGCCTGTGATTGCTTTAGAAGAAGCTGTAGATGGAAATCTTCTACGTAGTTATCCTATGGAAGATGTCTACAAGATGGGTGAATTATCACATTGGTGTTTGAGTGAAAATCCAGTGGACAGACCTGAAATGAAAGAGATAGTTGTTGTATTGTCAAAGATTGTAATGTCTTCAATAGAATGGGAAGCGTCACTAGGTGGAGACAGTCAAGTTTTCAGTGGTGTATTTGATGGAAGATGA 1860 0.3602 MIKTMAYSLIQLLSLLLPLLSSSFITTVFTFEVSIKNTYIEPFKCSTKIKTCNASIYHINYNHSIEQLADSYSVDPSEIKPIFRSTKQDYLIQVPCSCQDTIDLNGYFYDTNYKVSHNESFLNINNIVYSGQTWHVNEDLVANENVTIHIPCGCSELESQIVVTYTVQQGDTPTSISLLLNANLDGMVKMNEILGPNPTFIDIGWVLYVPKELKGSPLSIEKEKKHKWVIIIGILVSVTLLSVISLMIFILRRNKGYGSSKNDPKTFSKRSLANRTISLRNQEFHKEYMEDATQFDSERPVIYDFEEIEEATNNFDETRRIGVGGYGTVYFGMLEDKEVAVKKMKSNKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARAQIALDSAKGIEYIHDYTKARYVHRDIKTCNILLDAKLRAKVADFGLAKLVERTNDEEFLATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLSELITGKRALFRDNKEANNMKSLIAVVNKIFQDDEPVIALEEAVDGNLLRSYPMEDVYKMGELSHWCLSENPVDRPEMKEIVVVLSKIVMSSIEWEASLGGDSQVFSGVFDGR* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2154 619 SUPERFAMILY LysM domain 163 210 IPR036779 -
Psa2g2154 619 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 23 619 IPR044812 GO:0019199|GO:0045087
Psa2g2154 619 Pfam LysM domain 165 210 IPR018392 -
Psa2g2154 619 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 23 619 - -
Psa2g2154 619 Gene3D Phosphorylase Kinase; domain 1 293 386 - -
Psa2g2154 619 SMART LysM_2 164 210 IPR018392 -
Psa2g2154 619 ProSiteProfiles Protein kinase domain profile. 315 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g2154 619 Pfam Protein kinase domain 316 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g2154 619 Gene3D Transferase(Phosphotransferase) domain 1 387 604 - -
Psa2g2154 619 SMART serkin_6 315 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g2154 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Psa2g2154 619 SUPERFAMILY Protein kinase-like (PK-like) 299 591 IPR011009 -
Psa2g2154 619 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Psa2g2154 619 ProSiteProfiles LysM domain profile. 163 209 IPR018392 -
Psa2g2154 619 Gene3D LysM domain 158 216 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2154 Psa-Chr2 233017556 233020780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2154 295 619 Receptor kinase-like Gene Family AT1G51940 51.057 1.32e-115 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Psa2g2154 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2154 - - gmx:100800907 915.99