Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2096 ATGGCCATATCAGATACTAGACAAAGAAAAATGCCATCTATGAGAGATAGAAAAACAGGACAAGAACTAGCATATCCCGAAGCTGTTCAGTTAAAAAATCCATCTAACCCAGAATTTAAGGGAGAGGTGGATGATAAATACCAATACTCAAGTGAAAATCAATACAACCAAGTTAATGGATGGATTACTGCAGATTCTGAAAAGCCCGTGGGCTTTTGGATCATAACACCAAGTAATGAGTTCCGTAATGGCGGACCTATTAAACAAGATCTCACATCTCATGTTGGCCCGACTTGCCTCTTTATGTTTGTGAGCACCCACTATGCTGGCAAACAGGTAGAAATAGAATTTCAACAAGGAGAGGCATATAAAAAGGTTTTTGGACCTATTTTTGTTTACTTGAATTCTGCTCCAAGTAATAATCAATTCAAATCTCTATGGTCGGATGCTAAACAAAAGTTATTGAATGAACTCAAGAATTGGCCTTATGATTTTCCTCAATCAAAAGATTTTATTCCACCCAACCAAAGAGGAACACTACTAGGAAATTTAAGAGTCCAAGACGGGGGGAATAAATCTCAAAATGCTAAAAAAGCTTACATTGGTCTAGCTCTGCCTGGGCCTGCAGGGTCATGGCAGAGAGAAAGCAAGGGATATCAATTTTGGACTCGATCATACCTAAATGGAAACTTTATTATAAAAAACATTGTACCTGGAACATACAACTTGTTTGCCTGGATTCCTGGTTTCATCGGAGATTACAAATATAATTATGAAATTACAATTAAACCAGGATCTACCATCAATTTGAATTCACTTGTATATAATCCTCCAAGAAATGGACCTACTCTATGGGAAATCGGCGTTCCAGATCGATCTGCTGCTGAATTTTTTGTACCAAATCCTTATCCTTATCTCACCAACAAATTATATATTAACGATCCCATAAACAAGTTTAGAAATTATGGATTATGGAATCGTTACACCGAATTATATCCAAAACACGACATTGTTTACAAAGTTGGTGTTAGTAAATATCAAAATGATTGGTTTTTCGCTCATGTTCCAAGGATCCTAGAAAATAAAACTTATCAAGCAGCCACATGGAACGTTAAATTTGAACTTAGTAATGTATTAAATGGAAACTACACATTACAACTGGCCCTAGCAAGTGCCTCATATGCTGAA 1188 0.3636 MAISDTRQRKMPSMRDRKTGQELAYPEAVQLKNPSNPEFKGEVDDKYQYSSENQYNQVNGWITADSEKPVGFWIITPSNEFRNGGPIKQDLTSHVGPTCLFMFVSTHYAGKQVEIEFQQGEAYKKVFGPIFVYLNSAPSNNQFKSLWSDAKQKLLNELKNWPYDFPQSKDFIPPNQRGTLLGNLRVQDGGNKSQNAKKAYIGLALPGPAGSWQRESKGYQFWTRSYLNGNFIIKNIVPGTYNLFAWIPGFIGDYKYNYEITIKPGSTINLNSLVYNPPRNGPTLWEIGVPDRSAAEFFVPNPYPYLTNKLYINDPINKFRNYGLWNRYTELYPKHDIVYKVGVSKYQNDWFFAHVPRILENKTYQAATWNVKFELSNVLNGNYTLQLALASASYAE 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2096 396 MobiDBLite consensus disorder prediction 1 24 - -
Psa2g2096 396 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 396 - -
Psa2g2096 396 Gene3D - 172 272 - -
Psa2g2096 396 SUPERFAMILY Galactose mutarotase-like 41 138 IPR011013 GO:0003824|GO:0005975|GO:0030246
Psa2g2096 396 Pfam Polysaccharide lyase family 4, domain II 197 270 IPR029413 -
Psa2g2096 396 Pfam Rhamnogalacturonate lyase family 1 43 IPR010325 -
Psa2g2096 396 Pfam Polysaccharide lyase family 4, domain III 283 394 IPR029411 -
Psa2g2096 396 Gene3D - 5 151 IPR014718 GO:0030246
Psa2g2096 396 CDD RGL4_M 176 273 IPR029413 -
Psa2g2096 396 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 396 - -
Psa2g2096 396 SUPERFAMILY Galactose-binding domain-like 280 393 IPR008979 -
Psa2g2096 396 SUPERFAMILY Starch-binding domain-like 173 272 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2096 Psa-Chr2 221044398 221046438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2096 1 396 Polysaccharide Lyase AT1G09890 57.816 1.85e-157 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2096 K18195 - gmx:100781089 596.66