LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa2g2062	ATGGCTCGTGCTAGTACTACTAACTCAAATAACTGGTTATCGTTTTCACTCTCACCCATGGAAATGCCTCAGTTTGTTCAATACGACGCCGCTTCATCTGTTACTAACTCGTCTCATCAGAATCATCATCACTATTTTCTTGACAATATGTATTCTAATGGATGGGGAAACGGAAACTCAAAGACTGAAGCTGAAGCACAGGAACAATCGATTTGGTTTATGGATTCATCTAACGGACAGAGTGTGAACCACCACGCTCCACCGCCGAAGCTGGAGGATTTTCTCGGTGACAGTCAAACGGAGACGCAAGATTCTTCTCTTACTCACATGTACGATCACCATCAGCACCATCACCATGGTTCTACTTACTTCGGTGGGGACCACCACCATCAACACCAGCAACAGCAACAGCACCAGCATCAGCAGCACCACCAGCATCAGGATCTTAAGAGCATTACTGGCTTTCAAGCCTTTTCAAACAACTCAGGTTCTGAAGTTGATGATTCAGGTTCAATAGGAAAATCACAAGCTGCATGTAACGAGTTTGGAACTCATTGTGTTGAGTCAGGTAACGAGTTTACTTACTCCACCGCCGCCGCCACCGCCACCGCTAGTGGTGCTTTGTCCCTCGGCGTTGCTCAGAACTCCGAAGAAACTGCTATCACTGTTGCTGATTCAGATAGTTCCAAGAAAATCGTTGATACTTTTGGTCAGCGAACTTCGATTTACCGTGGTGTCACTAGGCATAGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAAGGCCAAGCCAGGAAAGGGCGTCAAGTCTATTTGGGTGGATATGACAAGGAAGAAAAGGCCGCAAGATCCTATGATTTGGCTGCTCTAAAGTATTGGGGTCCTACTGCTACTACCAACTTCCCTGTTTCCAGTTATGCAAAGGAATTGGAAGAGATGAAAGTAGTAACAAAGCAAGAATTCATTGCGTCATTGCGAAGGAAGAGTAGTGGCTTTTCAAGAGGAGCTTCCATCTATAGGGGTGTTACAAGGCATCACCAACAGGGTAGATGGCAAGCAAGAATCGGCCGTGTTGCCGGAAACAAAGACTTGTACTTGGGAACATTCGGTAAACATTTTAGCTTAAATTACTAG	1152	0.4549	MARASTTNSNNWLSFSLSPMEMPQFVQYDAASSVTNSSHQNHHHYFLDNMYSNGWGNGNSKTEAEAQEQSIWFMDSSNGQSVNHHAPPPKLEDFLGDSQTETQDSSLTHMYDHHQHHHHGSTYFGGDHHHQHQQQQQHQHQQHHQHQDLKSITGFQAFSNNSGSEVDDSGSIGKSQAACNEFGTHCVESGNEFTYSTAAATATASGALSLGVAQNSEETAITVADSDSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARSYDLAALKYWGPTATTNFPVSSYAKELEEMKVVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFGKHFSLNY*	384

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Psa2g2062	383	SUPERFAMILY	DNA-binding domain	343	377	IPR016177	GO:0003677
Psa2g2062	383	CDD	AP2	241	310	IPR001471	GO:0003700\|GO:0006355
Psa2g2062	383	Pfam	AP2 domain	242	300	IPR001471	GO:0003700\|GO:0006355
Psa2g2062	383	ProSiteProfiles	AP2/ERF domain profile.	344	383	IPR001471	GO:0003700\|GO:0006355
Psa2g2062	383	ProSiteProfiles	AP2/ERF domain profile.	242	308	IPR001471	GO:0003700\|GO:0006355
Psa2g2062	383	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	9	376	-	-
Psa2g2062	383	SUPERFAMILY	DNA-binding domain	241	310	IPR016177	GO:0003677
Psa2g2062	383	SMART	rav1_2	344	382	IPR001471	GO:0003700\|GO:0006355
Psa2g2062	383	SMART	rav1_2	242	314	IPR001471	GO:0003700\|GO:0006355
Psa2g2062	383	Gene3D	AP2/ERF domain	344	379	IPR036955	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa2g2062	Psa-Chr2	207519283	207524584	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa2g2062	73	375	AP2-EREBP Transcription Factor Family	AT5G10510	59.091	1.82e-123	365

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Psa2g2062		AP2	3.9e-12	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa2g2062	K09285		-	gmx:100775390	504.212

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