Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2062 ATGGCTCGTGCTAGTACTACTAACTCAAATAACTGGTTATCGTTTTCACTCTCACCCATGGAAATGCCTCAGTTTGTTCAATACGACGCCGCTTCATCTGTTACTAACTCGTCTCATCAGAATCATCATCACTATTTTCTTGACAATATGTATTCTAATGGATGGGGAAACGGAAACTCAAAGACTGAAGCTGAAGCACAGGAACAATCGATTTGGTTTATGGATTCATCTAACGGACAGAGTGTGAACCACCACGCTCCACCGCCGAAGCTGGAGGATTTTCTCGGTGACAGTCAAACGGAGACGCAAGATTCTTCTCTTACTCACATGTACGATCACCATCAGCACCATCACCATGGTTCTACTTACTTCGGTGGGGACCACCACCATCAACACCAGCAACAGCAACAGCACCAGCATCAGCAGCACCACCAGCATCAGGATCTTAAGAGCATTACTGGCTTTCAAGCCTTTTCAAACAACTCAGGTTCTGAAGTTGATGATTCAGGTTCAATAGGAAAATCACAAGCTGCATGTAACGAGTTTGGAACTCATTGTGTTGAGTCAGGTAACGAGTTTACTTACTCCACCGCCGCCGCCACCGCCACCGCTAGTGGTGCTTTGTCCCTCGGCGTTGCTCAGAACTCCGAAGAAACTGCTATCACTGTTGCTGATTCAGATAGTTCCAAGAAAATCGTTGATACTTTTGGTCAGCGAACTTCGATTTACCGTGGTGTCACTAGGCATAGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAAGGCCAAGCCAGGAAAGGGCGTCAAGTCTATTTGGGTGGATATGACAAGGAAGAAAAGGCCGCAAGATCCTATGATTTGGCTGCTCTAAAGTATTGGGGTCCTACTGCTACTACCAACTTCCCTGTTTCCAGTTATGCAAAGGAATTGGAAGAGATGAAAGTAGTAACAAAGCAAGAATTCATTGCGTCATTGCGAAGGAAGAGTAGTGGCTTTTCAAGAGGAGCTTCCATCTATAGGGGTGTTACAAGGCATCACCAACAGGGTAGATGGCAAGCAAGAATCGGCCGTGTTGCCGGAAACAAAGACTTGTACTTGGGAACATTCGGTAAACATTTTAGCTTAAATTACTAG 1152 0.4549 MARASTTNSNNWLSFSLSPMEMPQFVQYDAASSVTNSSHQNHHHYFLDNMYSNGWGNGNSKTEAEAQEQSIWFMDSSNGQSVNHHAPPPKLEDFLGDSQTETQDSSLTHMYDHHQHHHHGSTYFGGDHHHQHQQQQQHQHQQHHQHQDLKSITGFQAFSNNSGSEVDDSGSIGKSQAACNEFGTHCVESGNEFTYSTAAATATASGALSLGVAQNSEETAITVADSDSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARSYDLAALKYWGPTATTNFPVSSYAKELEEMKVVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFGKHFSLNY* 384
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2062 383 SUPERFAMILY DNA-binding domain 343 377 IPR016177 GO:0003677
Psa2g2062 383 CDD AP2 241 310 IPR001471 GO:0003700|GO:0006355
Psa2g2062 383 Pfam AP2 domain 242 300 IPR001471 GO:0003700|GO:0006355
Psa2g2062 383 ProSiteProfiles AP2/ERF domain profile. 344 383 IPR001471 GO:0003700|GO:0006355
Psa2g2062 383 ProSiteProfiles AP2/ERF domain profile. 242 308 IPR001471 GO:0003700|GO:0006355
Psa2g2062 383 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 9 376 - -
Psa2g2062 383 SUPERFAMILY DNA-binding domain 241 310 IPR016177 GO:0003677
Psa2g2062 383 SMART rav1_2 344 382 IPR001471 GO:0003700|GO:0006355
Psa2g2062 383 SMART rav1_2 242 314 IPR001471 GO:0003700|GO:0006355
Psa2g2062 383 Gene3D AP2/ERF domain 344 379 IPR036955 GO:0003700|GO:0006355
Psa2g2062 383 Gene3D AP2/ERF domain 242 310 IPR036955 GO:0003700|GO:0006355
Psa2g2062 383 MobiDBLite consensus disorder prediction 124 149 - -
Psa2g2062 383 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 9 376 - -
Psa2g2062 383 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700|GO:0006355
Psa2g2062 383 PRINTS Ethylene responsive element binding protein signature 290 310 IPR001471 GO:0003700|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Psa2g2062 Psa-Chr2 207519283 207524584 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2062 73 375 AP2-EREBP Transcription Factor Family AT5G10510 59.091 1.82e-123 365
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Psa2g2062 AP2 3.9e-12 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2062 K09285 - gmx:100775390 504.212