Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2020 ATGTTCCGTTCTGTTTTATTATCCTCTTATTTTCTGCTTCTTCTCTCTGCTGCGTCTGATTCGGAATATGAAAAAGAATGTGTAATAGGAAAAAACACTTTGTGTGGATATCTTGGGGAAATCTCCCTCCCCTTCACAACCGTTAACAACAAAGAATGTGGCCTTTACATAAGTGGTTGTGACAACAATAACCCTTTCGAGAAAAAAATCCATCTCAGAAACCAAATCTACATAATTGATAACATCAATTATAAGAAAAATTCAGTTATCATGTATGGCCACCACCACAGTTCCTCTGAATTATCTGGTTTAGAATTAATGAAAACGCCAGCAGCATTCAGCTTTAACACAGTCAATTTCATTGTATGCGGTCATGGCTATGATAATAGCCATGAAAAAATGTCCAAATATAGAAACTGTCCTGATTATGATATCTACTTTACTTCTAAACCTGATGATCTCATTTTCCCTATTTTTCCATTACCATGTTCTCCATACATTCCCCTATATAACGATTGTGTGGAATTAATTTCGTTACTCGAAATTAAAGTGGATTTAGAGTCTTGTGATTGTTATAGTAAAGGAAAGTCATGTCTTCTAGACCAAGATACTTTAAATTTCAAATGTGGCCATGATCTCTGGTATGGAGCTCCGGTACTTCAGAGTGAAGACCATTCTGATATTCATCCAAAGCGAAATGAACGGCATTTGAAGGTTGCGGTAATAGGTTTATCTATTGGATTGGCAACCGTGATTGCAATTGCCTTGTTTGTTATAATTTGGCTTTTCTACTTTCGGAGAATCAAATCTTCAGGTGTCAAAAACCAATCAAGAGCCAATTATGGCGGTCTTTCAAGAAATACAACAATCCCAGAAAGTGGAGCTGTCTACTTTGGGATTACTGTCTTCTTCTATAAGGAGCTCCAAGAGGCAACAAACAATTTTAATAAAGCCAGAGAGCTTGGAGAAGGAGGCTTTGGGACTGTTTACTACGGAAAGCTTGGAGATGGACGTGAAGTTGCAGTGAAGCGCCTATTCGAGCGCAGCTACAGACCAGTAGAATCATTCACAAACGAAATTCAGATCCTCACACGCATGCGCCACAGAAATCTTGTATCCCTTTATGGCTGCACTTCACGCCACAGTCGTGAATTGCTGTTAGTGTATGAATACATCCCAAACGGCACCGTCAATAGCCATCTCCACGACAAAAAAGAAAATCAAAACTCATCTTTACCCTGGGATATGAGAATGAAAATAGCCATAGAAACTGCCGGTGCATTAACTTATCTCCATGCTAATGATGTCATTCACCGAGACGTGAAAACCAGCAACATTCTACTTGACAACAGTTTTTGTGTTAAGGTTGCTGATTTTGGTCTTTCGAGACTATACCCTAATGATGTCACTCACGTCTCTACAGCGCCGAGAGGAACACCGGGCTATGTTGATCCAGAATATCGGTTGTGTTACCAGCTAACAAGCAAGAGTGATGTATATAGCTTTGGTGTAGTTCTTGTTGAGCTAATATCATCTTTGCCTGCAGTTGATTTCTCGAGGGATAGAGATGACATTAAGTTGGCAAATCTAGCAAAAAGAAAAATTCAGAAAAGGGAATTTTCTGAGTTGATTGATCCTTCTCTTCGTTTTCAGACAGATGAGAGTTTAAAAAATGTGATAAGTTCTGTTGCGGAATTGGCCTTCCAGTGTTTGCAAGATGAGAAGGAATTGAGACCCTCTATGAGTGAAGCATTGGAGGTGCTGCAGAAAATTGAAAGTTGCAAGGGTGAGGCAGAGAATCACGAGGGGATTGATTTTCATCATGGAGTAGAAGTAGCACAAAGTTATGCACATCCATCACTTCCAAACACTTGGATGAAGCCACAGCGCCATCAACAAACATTTTGA 1908 0.3947 MFRSVLLSSYFLLLLSAASDSEYEKECVIGKNTLCGYLGEISLPFTTVNNKECGLYISGCDNNNPFEKKIHLRNQIYIIDNINYKKNSVIMYGHHHSSSELSGLELMKTPAAFSFNTVNFIVCGHGYDNSHEKMSKYRNCPDYDIYFTSKPDDLIFPIFPLPCSPYIPLYNDCVELISLLEIKVDLESCDCYSKGKSCLLDQDTLNFKCGHDLWYGAPVLQSEDHSDIHPKRNERHLKVAVIGLSIGLATVIAIALFVIIWLFYFRRIKSSGVKNQSRANYGGLSRNTTIPESGAVYFGITVFFYKELQEATNNFNKARELGEGGFGTVYYGKLGDGREVAVKRLFERSYRPVESFTNEIQILTRMRHRNLVSLYGCTSRHSRELLLVYEYIPNGTVNSHLHDKKENQNSSLPWDMRMKIAIETAGALTYLHANDVIHRDVKTSNILLDNSFCVKVADFGLSRLYPNDVTHVSTAPRGTPGYVDPEYRLCYQLTSKSDVYSFGVVLVELISSLPAVDFSRDRDDIKLANLAKRKIQKREFSELIDPSLRFQTDESLKNVISSVAELAFQCLQDEKELRPSMSEALEVLQKIESCKGEAENHEGIDFHHGVEVAQSYAHPSLPNTWMKPQRHQQTF* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2020 635 Pfam Protein kinase domain 315 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g2020 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Psa2g2020 635 Gene3D Transferase(Phosphotransferase) domain 1 392 603 - -
Psa2g2020 635 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 602 IPR044652 -
Psa2g2020 635 SMART serkin_6 315 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g2020 635 SUPERFAMILY Protein kinase-like (PK-like) 298 595 IPR011009 -
Psa2g2020 635 ProSiteProfiles Protein kinase domain profile. 315 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g2020 635 Gene3D Phosphorylase Kinase; domain 1 292 391 - -
Psa2g2020 635 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Psa2g2020 635 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2020 Psa-Chr2 197514657 197518468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2020 45 593 Receptor kinase-like Gene Family AT1G25390 44.248 4.27e-138 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Psa2g2020 Pkinase 2.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2020 - - var:108334729 582.408