Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2017 ATGGGAAGAAGTAAGGTACAGCTAAAACGAATCGAGAACAAGATCAATCGACAGGTTACTTTCTCTAAAAGAAGAACTGGTTTGCTCAAGAAAGCTAATGAGATCTCAGTTCTTTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCTCATAATGGAAAACTCTTTGAGTATTCAACTGATTCATGCATGGAGCAGATACTAGAACGCCATGAAAGGTATGGCTATGCAGAGAAACTACTAGTAGCAAATGATACTACAGACGCTCAGGAAAACTGGACAGTTGAATACACTAGACTCAAGGCAAAGATAGATCTTTTGGAGAGAAACCACAGGCACTACATGGGAGAAGGTCTAGCTACAATGAGCCTGAAAGAGCTTCAATGTCTAGAACAGCAGTTAGATACTGGTCTCAAGAACATCCGTACCCGCAGAACTCAAGTTATGTATGAGGCCATTTCTGAACTTCAGAAAAAGGAGAAAGGGATACAAGAGCAGAATAACATGCTCTCAAAAGAGATAAAGGAGAAAGAGAAGTCTGTTGCACAGGAGGCGGCAGCAGCGGCTGCTTCTGCTCAGTGGGAGCAGCAGCCAAACTACAGAGTTGATACATCTTTCTTTCTACCTCACCCTCTTGCTGGTTTAAACATGGGTGGCAACTACCGTGAGGGAGATCAAGAACTGATGAGGAACGGGCTTGACCTCACTCTGGAACCACTGTATTATTAA 726 0.4284 MGRSKVQLKRIENKINRQVTFSKRRTGLLKKANEISVLCDAEVALIVFSHNGKLFEYSTDSCMEQILERHERYGYAEKLLVANDTTDAQENWTVEYTRLKAKIDLLERNHRHYMGEGLATMSLKELQCLEQQLDTGLKNIRTRRTQVMYEAISELQKKEKGIQEQNNMLSKEIKEKEKSVAQEAAAAAASAQWEQQPNYRVDTSFFLPHPLAGLNMGGNYREGDQELMRNGLDLTLEPLYY* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2017 241 Coils Coil 89 109 - -
Psa2g2017 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa2g2017 241 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa2g2017 241 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Psa2g2017 241 PANTHER MADS BOX PROTEIN 1 225 - -
Psa2g2017 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa2g2017 241 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 225 - -
Psa2g2017 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa2g2017 241 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Psa2g2017 241 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Psa2g2017 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa2g2017 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa2g2017 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa2g2017 241 Coils Coil 152 179 - -
Psa2g2017 241 Pfam K-box region 84 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa2g2017 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2017 Psa-Chr2 197074154 197082397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2017 1 240 MADS-box Gene Family AT1G26310 61.290 3.26e-100 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa2g2017 K-box 6.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2017 K09264 - gmx:100810129 336.265