Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g2009 ATGCAGGACAGGTTAGGCCAGGGTGATCCCCGAGGCTCTATCCGTTATGATTCAAGTTTAAAGTTTCCTTCGACCGTCTCAATAACCTTTCTGCTTGATGAAGAAATAAATAAAGATGATGGTGAAAGCAACTTCAAGCAATGTTCTGCTGTGGAAATTCAAGATGACAACCTCATTTGGGATCGTGAATTTGTGTTTCCAACTTTATCAGATGTAAATTTAGGAATCAAACAGGGACAAGAAATAACAATTTGTGGACCAGTTGGTGCTGGAAAATCATCACTTGCAATATTTGGAGAGGTTCATAAGATTTCTGGAACACCTTGCTTATGTTTCTCAACAGAAATTGGTCCGAGCGGGATAAGCATGAGTGGAGGACAAAAACAAAGGATTCAACTAGCTAGAGCCGTCTACAATGATGCAAATATCTATCTTCTTGATGACCCTTTCAGTGCAGTTGACGCACATACGGTTGACTTCGTTTTTGGGTTTAAGAGCTTCCACTGCTTCCTTCTCAAGCTTCACTACGGTGCAGGTTACGGTACTGTCGCTTTGGTCGCAGTGGGCACGTACGCAGCATCGCAGTTTTGCAGCTTTGTTCGCGGTATTGGATCCGGGAGCGTGGCCTCTAGCATTTTTGGTTCATCCCACAGCTATGCTGCTGTTTTGTTGCTTGCAGCTCGAAAGTTTGGATTTGGACGGCGTGGGTTTCCTGTTGGAGTACCTTGTTGTGAACAAAATCTTGTTGATGGCTTAAACGATCATGTCATCAAGGTTGGAACTAACGTGTCCACACACCAATGGCTCGTCCAAAGATTAACGTGA 825 0.4388 MQDRLGQGDPRGSIRYDSSLKFPSTVSITFLLDEEINKDDGESNFKQCSAVEIQDDNLIWDREFVFPTLSDVNLGIKQGQEITICGPVGAGKSSLAIFGEVHKISGTPCLCFSTEIGPSGISMSGGQKQRIQLARAVYNDANIYLLDDPFSAVDAHTVDFVFGFKSFHCFLLKLHYGAGYGTVALVAVGTYAASQFCSFVRGIGSGSVASSIFGSSHSYAAVLLLAARKFGFGRRGFPVGVPCCEQNLVDGLNDHVIKVGTNVSTHQWLVQRLT* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g2009 274 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 114 162 - -
Psa2g2009 274 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 31 107 - -
Psa2g2009 274 ProSitePatterns ABC transporters family signature. 123 137 IPR017871 GO:0005524
Psa2g2009 274 SMART AAA_5 78 237 IPR003593 -
Psa2g2009 274 Pfam ABC transporter 117 150 IPR003439 GO:0005524
Psa2g2009 274 Gene3D - 28 107 IPR027417 -
Psa2g2009 274 Gene3D - 108 187 IPR027417 -
Psa2g2009 274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 53 225 IPR003439 GO:0005524
Psa2g2009 274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 162 IPR027417 -
Psa2g2009 274 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 114 162 - -
Psa2g2009 274 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 31 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g2009 Psa-Chr2 194781501 194783638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g2009 112 161 Calmodulin-binding Proteins AT2G36910 46.000 7.33e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g2009 - - gmx:100784827 149.058