Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1996 ATGAGTGACAAAGAAAAGTATGAGGTGGATAGAAATGGGGATCCTATGAGTTACTCTTCTGGTATGCCTCCTGATTGGAGATTTGAGGGTGGTAATCTTGTGAATTCATCTGTTGGTTTGGTTTCAATTGGTGATTCTATGAATATCAATAGAGGGGATTTGGTTGGTTCTTCTTCATGTTCCTCTGCCTCAATGGTGGACTCTTTTAGTCCTAGCTTTTGGGAACATTCAGGAAATTCCCAGAATTTGGGATTTTGTGAGATGAATGTTCAACACAATGGGAGCTCTTCCAATGCGGTTGGAATTAGAAAAGATGGCTTTGGTTTTGGAAGAGGTGGTCATGATGAAATAGGTTGGAACCAGGCTAGTTCTATGTTGAAAGGGGATGGTTTTTTACCAAATGGACAAGGGGTTTTTCCTCAGAATTTATCTCAGTTTCCAGCTGATTCTGGTTTCATTGAAAGGGCTGCAAGGTTCTCTTGCTTCGGTGGAGGGAATTTCGGTGATGCGATGAACTCGTATGGGATTCCTCAATCCATGGCTATGTATGTTGGTGGCGCGGTTCATGGTGGTAGGGATGCTCTTGCGACGGGCATTGGATTGAAAATAGCAACTGGTGGACAATCACAAGAGAGTAGTGATCCTAATGTAATTGAAGCAGCTACAAAAGGCGTGTCTCCCTCTGTTGAGCAATTGGCTACTAGAGGAAGCCCTTTAATGAATGATAAACGCGAGACTCATGCCATATCTCGAGATGAAGAGAAGCAGGCTCTTGTTCGGAATGCTAACGATTCTGATAGAGGTGAGTCGGGAGATGGTGATGGTGGTGGTGGACAGGGTGGTTCGCCAATGTTGGAGGGTACTACTAGTGGGGAGCCTTCTATTAAAGGACTAAACTCGAAGAAAAGAAAAAGAAGTGGACATGATGCTGATAACAATAAAGTTAATGAAGTTCAAGAACTACAAAGTGAAGGAGCAAAGGACAACCGTGAGAATCAACAGAAGGGAGACCAACAGCCAACTTCAACCACCAAGGTTTCTGGGAAGAATGCCAAACAGGGCTCTCAATCTTCTGATCCACCTAAGGAGGAATATATACATGTTAGGGCTCGGCGGGGTCAAGCAACAAACAGCCATAGCCTTGCAGAGAGGGTGAGGAGGGAAAAGATAAGTGAAAGGATGAAGTTTCTTCAGGAACTTGTGCCTGGATGCAGCAAGGTCACCGGCAAGGCAGTGATGCTGGATGAAATCATCAACTATGTACAGTCACTTCAACGACAAGTTGAGTTTTTATCTATGAAACTTGCAACAGTAAATCCACGGCTGGATTTTAATATCGACGGCCTTCTTGCTAAAGATATTCTTCACCAACGGCCCGGTCCTTCATCCGCACTAGGGTTTCCTTTAGAGATGGCTATGAATTTTCCTCCATTACATCAATCTCAACCAGGGCTGATTCAGTCAGTTATTCCAAACATGACAAACCCGTCCGATATCCTTCGTAGAGCTATTCATCCGCAATTGAGTGGAGGGTTCAAGGAGCCAAATCAGATGCCTGATATGTGGGAGGATGAGCTTCACAATGTTATACAAATGAGCTTTGCAACAACTGCTCCCACGAGTAACCAAGATGTGGACGGTAATGCTGTATCAAATCAGATGAAAGTTGAACTTTGA 1677 0.4407 MSDKEKYEVDRNGDPMSYSSGMPPDWRFEGGNLVNSSVGLVSIGDSMNINRGDLVGSSSCSSASMVDSFSPSFWEHSGNSQNLGFCEMNVQHNGSSSNAVGIRKDGFGFGRGGHDEIGWNQASSMLKGDGFLPNGQGVFPQNLSQFPADSGFIERAARFSCFGGGNFGDAMNSYGIPQSMAMYVGGAVHGGRDALATGIGLKIATGGQSQESSDPNVIEAATKGVSPSVEQLATRGSPLMNDKRETHAISRDEEKQALVRNANDSDRGESGDGDGGGGQGGSPMLEGTTSGEPSIKGLNSKKRKRSGHDADNNKVNEVQELQSEGAKDNRENQQKGDQQPTSTTKVSGKNAKQGSQSSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIDGLLAKDILHQRPGPSSALGFPLEMAMNFPPLHQSQPGLIQSVIPNMTNPSDILRRAIHPQLSGGFKEPNQMPDMWEDELHNVIQMSFATTAPTSNQDVDGNAVSNQMKVEL* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1996 558 MobiDBLite consensus disorder prediction 304 334 - -
Psa2g1996 558 Pfam Helix-loop-helix DNA-binding domain 377 425 IPR011598 GO:0046983
Psa2g1996 558 Gene3D - 371 444 IPR036638 GO:0046983
Psa2g1996 558 SMART finulus 380 430 IPR011598 GO:0046983
Psa2g1996 558 MobiDBLite consensus disorder prediction 223 363 - -
Psa2g1996 558 MobiDBLite consensus disorder prediction 537 558 - -
Psa2g1996 558 CDD bHLH_AtBPE_like 364 449 - -
Psa2g1996 558 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 10 557 IPR024097 GO:0006355
Psa2g1996 558 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 443 IPR036638 GO:0046983
Psa2g1996 558 MobiDBLite consensus disorder prediction 335 360 - -
Psa2g1996 558 MobiDBLite consensus disorder prediction 240 271 - -
Psa2g1996 558 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 374 424 IPR011598 GO:0046983
Psa2g1996 558 PANTHER BHLH TRANSCRIPTION FACTOR 10 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1996 Psa-Chr2 194054260 194058224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1996 1 557 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 41.608 2.39e-103 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa2g1996 HLH 6.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1996 - - gmx:100797720 770.385