Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1992 ATGATTCTGGTTAAGAGAATGAGAGAAACATTATACTCTTCCCTCCTTCTTCAGGATATATCGTTTTTTGACAATGAAACAGTAGGAGATTTGACAAGTAGACTTGGGGCAGATTGTCAGCAAGTTTCAAGGGTTATTGGAAATGATCTTAACTTGATATTGCGCAATGTCCTTCAGGGAGGAGGTTCATTAATCTACTTGTTGGTTTTGTCTTGGCCACTTGGTTTATGTACGTTGGTGATATGCTCCATATTGGCAGCGGTCATGTTACGTTATGGAAGGTACCAGAAGAAGGCAGCACGGTTGATCCAAGAAGTCACTGCTTCTGCTAATAATGTAGCTCAAGAGACATTCTCTCTTATTAGAACTGTTCGAGTTTATGGAACAGAAGAAGAAGAACAGGGGAGGTACAAATTGTGGCTGGAAAAATTAGCTGACATAAGCTTGCGCCAAAGTGCTGCATATGGATTTTGGAATTTTAACTTCAACACTCTTTATCACTCAACTCAGGTTATTGCCGTGCTATTTGGAGGAATGTCTATCCTAGCGGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTATACAGTGAATGGTTAATTTATTCAACCTGGTGGGTGGGCGACAATATATCCAATTTGATGCAGTCAGTTGGAGCTAGTGAGAAAGTGTTCAATTTAATGGATCTCTCGCCTAGCAGCCAATTTATCACAGAAGGAATGAGGTTGCAAAGTTTAACGGGGCATTTGGAGTTTGTAAATGTATCTTTTCACTATCCTTCGAGGCCAACGGTTTCTGTAGTGCAACATGTAAGCTTTGTTGTCAATCCTAGCGAGGTGGTTGCCATTGTCGGTCTTAGTGGCAGCGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTACAAGTGGTCAGATTTTGATAGATGGTGTCCCTCATAAAGACTTGGATGTCATGTGGTGGAGAGAGAGAATCGGATATGTGGGACAGGAACCGAAGCTATTCCGGATGGATATTAGCTCAAACATCAGATATGGATGTACCCGAGATGTAAAGCAGGAGGATATTGAGTGGGCTGCGAAGCAGGCCTATGCTCATGACTTTATCTCGGCACTTCCTAATGGTTATGAAACACTTGTTGATGATGATCTTTTAAGTGGTGGACAAAAGCAGCGAATTGCTATTGCTAGGGCTATTCTTAGGGACCCAAAAATATTGATCCTTGATGAAGCCACTAGTGCATTGGATGCTGAAAGTGAACATAATGTGAAGGGTGTTCTTCGATCTGTTAGAAGTGATTCTGCATCAAGGAGAAGTGTCATAGTCATTGCACACAGGCTTTCTACCATACAAGCTGCTGACAGGATTGTGGTTATGGATAGGGGTCAAATTGTTGAGAATGGAAGTCACAGGGAACTTCTCTTGAAAGACGGTTTATATGCTCGGTTAACTAGAAAACAGGCTGATTCCATGGAGTGA 1491 0.4178 MILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGGGSLIYLLVLSWPLGLCTLVICSILAAVMLRYGRYQKKAARLIQEVTASANNVAQETFSLIRTVRVYGTEEEEQGRYKLWLEKLADISLRQSAAYGFWNFNFNTLYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFNLMDLSPSSQFITEGMRLQSLTGHLEFVNVSFHYPSRPTVSVVQHVSFVVNPSEVVAIVGLSGSGKSTLVNLLLRLYEPTSGQILIDGVPHKDLDVMWWRERIGYVGQEPKLFRMDISSNIRYGCTRDVKQEDIEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSASRRSVIVIAHRLSTIQAADRIVVMDRGQIVENGSHRELLLKDGLYARLTRKQADSME* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1992 496 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 217 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa2g1992 496 PANTHER ABC TRANSPORTER B FAMILY 1 495 - -
Psa2g1992 496 CDD ABC_6TM_TAP 1 225 - -
Psa2g1992 496 SMART AAA_5 278 473 IPR003593 -
Psa2g1992 496 SUPERFAMILY ABC transporter transmembrane region 3 233 IPR036640 GO:0005524|GO:0016021
Psa2g1992 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 491 IPR027417 -
Psa2g1992 496 Pfam ABC transporter transmembrane region 3 202 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa2g1992 496 Gene3D ABC transporter type 1, transmembrane domain 4 248 IPR036640 GO:0005524|GO:0016021
Psa2g1992 496 PANTHER ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC 1 495 - -
Psa2g1992 496 Gene3D - 249 492 IPR027417 -
Psa2g1992 496 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 251 490 IPR003439 GO:0005524
Psa2g1992 496 ProSitePatterns ABC transporters family signature. 389 403 IPR017871 GO:0005524
Psa2g1992 496 Pfam ABC transporter 270 417 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1992 Psa-Chr2 193428436 193434665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1992 6 496 Calmodulin-binding Proteins AT2G36910 34.600 3.87e-74 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1992 - - gmx:100775951 875.93