Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1952 ATGGATGCAACACAAAAAGAGAAAATCTATGTTGCTATTGGTGATGATGCACAAGATGGATTTAATACTTTAAATTGGGCTCTTCAGAAATGGAATTCTCATCCAATTTCCATTGTTATTCTTCATGTGACTCATAGCATTTCTAAGGATTATGTTTATACACCATTTGGAAAACTTCCAGCAAGATCTTTGAATGATGAGAAACTTGAAGCTCTAAGAAAAGATGAGAAAGAGAGAATCAAGAAGCTGTTTTCCAAATATATTGCTTTTTGTGGCAAGGTGTCAGTCAAAATTCTTGAAATCGAGAAATTTGATGAACCGGTACAGAAGCATGTCATCGATATGATAAATGAACTAGAAATAACCAAATTGGTTATGGGATTTTCATTTATGAAGCCTTCTTTAAAATCAAAAGGTGCTATTAGTGGATTATTCTATGTTCATCAACACAAACCTAGTTTATGTGAATTATTCATTATATGTGGTGGGAAGCAAGTTTTTCTAAGGGGAAACAGTGATGAGAAAATCATGGAAGATGATAGTGGAGTAATGGTTGCAAAAATGAAAGATAAGGTAACTTTTAAAGATTGGTTAGACAAAATGTTTAGTGACAAAATAAGTGATTATTCTCAGAATAGATTAAGTGCTTCTCCTTCATCAACCAATTTGGTTCAAAATCAATGGGAGTTTTATCTTCAAGACATGGAAAATTATCATCAAGAATTGTTGTTATCTTCAAATTTGGAGGAAGGAATTTATGTGCAGGAGAATGATGACTTGCACGTTGGTACAAAAATTGGGCCACTTGTCATTGAATTGAACAATTCTAATAAGAATACTACAGAAAAAATTGAGATCCTTCGCAAAACCATTGAGTTGAAGAGAAAAGAGGCTAAGGAAAATATAGAAAGACGCACAAAAGCCGAATGGGCAATTAGCTTATGCAACAGCAGGGCCGAAGAACTTGAAGGTAGAATAAGGGAAGAAGTAAGTACAAAGGAGAATCTCAACAAGGAACTACATTTAGAGAAAGAGCAAAGAGAAGAAATGAGAGCAGAGATTAAAGAGAGAAAACAAAGGATGAATTCATTAGTAGAGCTTCAATCAGAATTATCAAACAAGCTTCAACTTTCAACAATATCGAGATCAAGAGCAGAGACGCAGGTAGAGAGAGCAGTGAGGGAGAGAGCGGACATGGTGAGGGAGATAGAGGAGTTGAGGAAGCAGAGGGATGTATTGAATCGAAGGATCGAGTTTTGTAAGCAGAAAGATGTTATAGGTATGGCAGCGAGGTTGAGCGACAATGGTGGCACAAGTTGCGGGATGAGGGAGTATAGTGAGGAGGAGTTGAGGTTGGCGACTGATAACTTTTCTCAGCGGTTGAGGTTGAAGTGCGGTCGAGAATGGACTAATGTGTTTAGAGGACGGTTTAACCACTCTACCGTTGCGATTAAGATGATGGCTTCTTTTACTTCTTTGTCTCAAGAGGATTTTCAATCTAAGGTAAGGTTTGTTGGTGATATTAGGCATCCACATCTAGTTGCTGTGGTTGGCTTCTGCTCCGAGCCAAAATGTGTAGTTTTTGAATACATGGGCAATGGGAGCTTACAGGACATGCTGTTTACCAGAAGAAGAAATAGAGGCTTACGGTGGCACGATCGAATACGTATTGCGACAGAAGTATGCTCGGGTCTTGGCTTTCTGAATTCATCTCGACAAATGTATGTTATTCATTGTCATTTGAGCCCGGCACATGTCCTCCTAGACCGTAATTTAGTTGCAAAAATCACAGGCTTTGGGCTTCAAGAGTGTAACGATGACGACAACGAATGCAATGTCGAGTCAGATTTACGTGTTGTAGGGGTTTTACTGATGCAGCTTTTAACTGGAAGAAATTGGGATGAGCCCATTGAGGAGCTTATGACAATGGACATGGATAGAGAAACATTGGTTAACATTCTTGATGACATGGCAGGACAATGGCCATTGGATCTAGCAAAAGAACTTGTGAGCCTGGCAATGATTTGCATGTCCATGAAAAGCAAACCCAACCCAAATCTAAGTATTGCAAAGGTGATAGAAGAACTCAATAAGATAAGAAGAAAGGGTGATGAAATAGTTGCAAAAGAAGATAGAAAGATAACCATTAGTGGATGCATTGATAGAGAAGGCTCTAGTGATGTGCCTAGTGTTTTCCTTTGCCCTATACAACAGGAGGTAATGAAAAATCCACATGTGGCAGCAGATGGGTTTTCTTATGAGCTAGAAGCAATAGAACAGTGGTTGCATTCAGGACATGATACATCACCAATGACAAACTTAAGGCTCAAACACACATCCCTTACACCAAATTATACCCTCCGTTCCTTTCTTGAAGAATGGCAGAGCAACAAATCAGCTCAAATTTCAAATTAA 2415 0.3847 MDATQKEKIYVAIGDDAQDGFNTLNWALQKWNSHPISIVILHVTHSISKDYVYTPFGKLPARSLNDEKLEALRKDEKERIKKLFSKYIAFCGKVSVKILEIEKFDEPVQKHVIDMINELEITKLVMGFSFMKPSLKSKGAISGLFYVHQHKPSLCELFIICGGKQVFLRGNSDEKIMEDDSGVMVAKMKDKVTFKDWLDKMFSDKISDYSQNRLSASPSSTNLVQNQWEFYLQDMENYHQELLLSSNLEEGIYVQENDDLHVGTKIGPLVIELNNSNKNTTEKIEILRKTIELKRKEAKENIERRTKAEWAISLCNSRAEELEGRIREEVSTKENLNKELHLEKEQREEMRAEIKERKQRMNSLVELQSELSNKLQLSTISRSRAETQVERAVRERADMVREIEELRKQRDVLNRRIEFCKQKDVIGMAARLSDNGGTSCGMREYSEEELRLATDNFSQRLRLKCGREWTNVFRGRFNHSTVAIKMMASFTSLSQEDFQSKVRFVGDIRHPHLVAVVGFCSEPKCVVFEYMGNGSLQDMLFTRRRNRGLRWHDRIRIATEVCSGLGFLNSSRQMYVIHCHLSPAHVLLDRNLVAKITGFGLQECNDDDNECNVESDLRVVGVLLMQLLTGRNWDEPIEELMTMDMDRETLVNILDDMAGQWPLDLAKELVSLAMICMSMKSKPNPNLSIAKVIEELNKIRRKGDEIVAKEDRKITISGCIDREGSSDVPSVFLCPIQQEVMKNPHVAADGFSYELEAIEQWLHSGHDTSPMTNLRLKHTSLTPNYTLRSFLEEWQSNKSAQISN* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1952 804 Pfam Protein tyrosine and serine/threonine kinase 470 613 IPR001245 GO:0004672|GO:0006468
Psa2g1952 804 ProSiteProfiles Protein kinase domain profile. 446 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g1952 804 Pfam U-box domain 728 799 IPR003613 GO:0004842|GO:0016567
Psa2g1952 804 Gene3D Phosphorylase Kinase; domain 1 432 530 - -
Psa2g1952 804 SUPERFAMILY RING/U-box 725 799 - -
Psa2g1952 804 Coils Coil 319 367 - -
Psa2g1952 804 Coils Coil 270 297 - -
Psa2g1952 804 SUPERFAMILY Protein kinase-like (PK-like) 440 688 IPR011009 -
Psa2g1952 804 Gene3D Transferase(Phosphotransferase) domain 1 531 721 - -
Psa2g1952 804 PANTHER OS02G0152300 PROTEIN 5 797 - -
Psa2g1952 804 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 726 803 IPR013083 -
Psa2g1952 804 SMART Ubox_2 731 794 IPR003613 GO:0004842|GO:0016567
Psa2g1952 804 Coils Coil 382 423 - -
Psa2g1952 804 CDD RING-Ubox_WDSUB1_like 732 773 - -
Psa2g1952 804 ProSiteProfiles U-box domain profile. 727 801 IPR003613 GO:0004842|GO:0016567
Psa2g1952 804 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 5 797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1952 Psa-Chr2 185468630 185472484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1952 3 804 U-box Gene Family AT5G65500 46.944 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Psa2g1952 PK_Tyr_Ser-Thr 9.4e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1952 - - gmx:100786771 1153.27