Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1929 ATGGAAGAAGTACTTAACCGTCTCAACGGAACAACCCCAACACCCACCACAGAACCCGACTCCAAAAAACCAGCCGCCAACAAAAGAGCATTACGCGAAACTACTGCTATCGCCGGCAACGGCGGTGCCCTTAGGTACCGCGGAGTACGCCGCCGTCCATGGGGCCGTTACGCAGCTGAAATAAGAGACCCTCAGTCTAAAGAACGCCGTTGGTTAGGTACTTTCGACACTGCTGAAGAAGCTGCTTGTGCTTACGACTGCGCCGCACGTGCCATGCGTGGCATCAAAGCTCGTACCAATTTCGTTTATCCAACTTCTCCTCCTCCTTCTTCCACTTTTCCTTCCTTCAACTTCCCGAAACATTCTTATTCTCATTCTCATTCTCAAAATCTTGATAAAACCTCTGCAAACAACCGACACGTGTCGTCTTCTGGTTGGTTAACCGCCTCTGAAACAAACGGTGGTGATTTCGGTAACCATAGAAACCCTTCAACTACTTCACTTGACATGCTTCTCTTTCGTGAGTTCATCAACTCTTCTAATTCCAACTCTTCACTTCAGAATCACTTTCACGACAACTTTTCATATTCCTACAACAACAACATAGGTAATTCTAGTACTAGTTCAACCTCTAGTTCCGGTTCCGGTTCTACTTTTCTCCCAGGTTGTTGTTTGGCGAATTCATGTAGTGGGGGTGTCAATAGCAACAACATGAACAACACCTTTGTCGGTTTAGATGGTTCCAAACTTTCTGCTGATGAAGATAATGAGTTTTTTCCTAAAGAGTCTTCTGATTCTGGATTATTGGAAGAGATTGTTAACAGGTTCTTACCAAAACCTAAGCAAGAGATTAAGAATGAAGGTTTGGGAAAGACTTTCTGCGACCCTTTTGTTCCTGCTGCACCTGTCTATGATCACACGCTTGAGATTAAAAAGGGTCTTCAAAAGAACGATTTTTTAGGTGGTGGATTTGATCAAAATGATTTCAATATGCAACAGTTTGAGAATTTTAATAATGGGTTTAACAGCACTTTTCAGTCTGTGCCTTTTGGAAATGAACAAGTCATGGTGAATCATCCTGAGAATTCAGTTTTTCAGTATCAAGAGGTTCTTAATGCTTTTGCACTCAGGATGCAAAATGCTTAA 1146 0.4284 MEEVLNRLNGTTPTPTTEPDSKKPAANKRALRETTAIAGNGGALRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGIKARTNFVYPTSPPPSSTFPSFNFPKHSYSHSHSQNLDKTSANNRHVSSSGWLTASETNGGDFGNHRNPSTTSLDMLLFREFINSSNSNSSLQNHFHDNFSYSYNNNIGNSSTSSTSSSGSGSTFLPGCCLANSCSGGVNSNNMNNTFVGLDGSKLSADEDNEFFPKESSDSGLLEEIVNRFLPKPKQEIKNEGLGKTFCDPFVPAAPVYDHTLEIKKGLQKNDFLGGGFDQNDFNMQQFENFNNGFNSTFQSVPFGNEQVMVNHPENSVFQYQEVLNAFALRMQNA* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1929 381 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Psa2g1929 381 MobiDBLite consensus disorder prediction 1 30 - -
Psa2g1929 381 MobiDBLite consensus disorder prediction 7 21 - -
Psa2g1929 381 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 9 381 - -
Psa2g1929 381 CDD AP2 45 101 IPR001471 GO:0003700|GO:0006355
Psa2g1929 381 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Psa2g1929 381 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Psa2g1929 381 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 381 - -
Psa2g1929 381 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Psa2g1929 381 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Psa2g1929 381 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Psa2g1929 381 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1929 Psa-Chr2 178686583 178688039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1929 1 280 AP2-EREBP Transcription Factor Family AT1G24590 37.793 2.60e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa2g1929 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1929 - - gmx:102669715 268.085