Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1921 ATGGCGTGGCTGGAGCTTGGAAAGAAGAGAATATATATGAATTTTACCAGAGCTTTGGCTACAACGTCACGTAAGCATGTGGTTGGGTCAAGTTTTACATCTATATTTGCTGAGCAAGCTGTATATGCTTCAGCAAGATGCGTGCCTGATTTCATCAATCACTCTTATCTTGGTGCGGCTGGTTTTTGTATTGGGAGTAAAGAAAGTGGAACACGGTGCTTCCATGCTAGCTCACAGGTCTGGGCAAGAAGTGATGCGGCATATGGTTTGAAGACCCCAAAGAAGGAGAAGTACGTGAGAAAAGACAGTAAAAATCAGCCTCCTGTTGAAGCTCCCTATGTCCCTCGTAATGTCACATCAGCCAAATCTAATCCTGATAAAACAATAGAAATATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGTTCTGGAAAATCAGTATCTTCTTTGCAAGATATTCTCACAAATGTTGGTGAAAAGATTGAATCAGAGTTTGAGCCTCTCAGTATGGATGTCGCCGAGCTTGCTGCAATGGAGGTTGGCGTCAATGTTAAGAGGTTACATTCAACCGAAGGTGCAGAACTTTTACCACGTCCTGCAGTTGTAACAGTGATGGGTCATGTTGATCACGGCAAAACTTCCCTTCTCGATGCCTTACGTCTAACATCAGTGGCAGCCAAGGAGGCTGGTGGCATTACTCAGCATCTAGGTGCCTTTGTGGTGGGCATGTCATCAGGAGCATCAATCACATTTCTTGACACTCCTGGTCATGCTGCATTTAGTGCAATGCGTGCAAGAGGTGCAGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCCGATGATGGTGTAATGCCCCAAACACTTGAAGCTGTGTCCCACGCAAAATTATCTAATGTACCAATTGTAGTTGCAATCAATAAATGTGATAAACCAGGTGCGAATCCCGAAAAAGTAAAATTACAGCTTGCTTCTGAGGGCTTGCTGCTGGAGGAGATGGGTGGAGATATTCAGGTTGTTGAAGTTTCAGCGGTTCAAAAGACTGGACTAGATAACTTAGAGGTAGCTTTACTCCTACAGGCTGATATGATGGACCTTAAAGCACGATTTGATGGGCCTGCTCAAGCATATGTGGTTGAAGCAAGACTTGACAAAGGACGGGGTCCATTGGTGACTACTATAGTGAAGGCAGGGACTCTAGTTTGTGGACAGCATGTAGTTATAGGATCACAGTGGGGAAAAATTAGGGCTATTAAAGATACAGCAGGGAGGTTAACTCAGCGAGCAACTCCCGCAATGCCTGTTGAAATTGAAGGGCTCCGAGGGCTGCCAATGGCTGGTGATGATGTCATTGTTGTTCATTCTGAGGAGCGAGCTAGAATGCTCAGTTCTGGTAGGAAAAGGAAATCTGAAGAGGACAGGCTTAGGGGCAAGATGGTGCAGAATGTGCCAACTACTTCAGATGATTCTGAGGAGGGGGTCCCACTCAGGGTTGAAATGCCAGTAATTGTAAAAGCAGATGTTCAGGGAACTGTACAAGCCGTTACAGATGCATTGACAACTTTAAATAGTCCCCAGGTTTCTGTGAATATTGTTCATGTTGGCGTGGGGCCTATTTCTCAATCTGATGTGGACCTAGCACAGGCTTGTGGTGCATGCATAGTTGGATTCAATGTCAAGAGTCCACCTATTTCTCTTAGCCAGGCAGCAACTCGTGCTAGTATCAAGGTAATTCTGCACCGTGTAATTTACCACTTATTGGAAGATATAGCCAATTTAATAATTGAGAAGGCCCCGGGTACTTCGGAGACTCAGGTAGCTGGGCAAGCAGAAGTTCTGAATATCTTTGAAGTGAAAGGGAGCAAATCTAAGGGACCCGATGTGAAAATAGCTGGTTGTAAGGTTGTTGATGGTTTTGTGAACAAGTCATCAACCATGAGGCTTCTAAGAAGCGGTGAAGTGGTGTTTGAAGGACTTTGTTCATCTCTTAAGAGGGAGAAGCAGGATGTGGATTCTGTGAAGAAAGGAACGGAGTGTGGACTAGTAATCAGTAACTGTTCTGATTTTCAGATTGGGGATGTTGTCCAGTGCTTAGAACAAGTAGTAAGGAAGCCTAAGTTTGTTAAATCGGAGAGTGGTGCTGTTCGAATAGAGTGCTGA 2163 0.4471 MAWLELGKKRIYMNFTRALATTSRKHVVGSSFTSIFAEQAVYASARCVPDFINHSYLGAAGFCIGSKESGTRCFHASSQVWARSDAAYGLKTPKKEKYVRKDSKNQPPVEAPYVPRNVTSAKSNPDKTIEIFEGMTLVELAKRSGKSVSSLQDILTNVGEKIESEFEPLSMDVAELAAMEVGVNVKRLHSTEGAELLPRPAVVTVMGHVDHGKTSLLDALRLTSVAAKEAGGITQHLGAFVVGMSSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAVSHAKLSNVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDIQVVEVSAVQKTGLDNLEVALLLQADMMDLKARFDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVIGSQWGKIRAIKDTAGRLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRKRKSEEDRLRGKMVQNVPTTSDDSEEGVPLRVEMPVIVKADVQGTVQAVTDALTTLNSPQVSVNIVHVGVGPISQSDVDLAQACGACIVGFNVKSPPISLSQAATRASIKVILHRVIYHLLEDIANLIIEKAPGTSETQVAGQAEVLNIFEVKGSKSKGPDVKIAGCKVVDGFVNKSSTMRLLRSGEVVFEGLCSSLKREKQDVDSVKKGTECGLVISNCSDFQIGDVVQCLEQVVRKPKFVKSESGAVRIEC* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1921 720 Gene3D Translation factors 371 485 - -
Psa2g1921 720 SUPERFAMILY Translation proteins 372 454 IPR009000 -
Psa2g1921 720 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 499 608 IPR036925 -
Psa2g1921 720 Pfam Translation-initiation factor 2 499 591 IPR023115 -
Psa2g1921 720 Pfam Elongation factor Tu GTP binding domain 203 355 IPR000795 GO:0003924|GO:0005525
Psa2g1921 720 Gene3D Translation factors 603 705 - -
Psa2g1921 720 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 73 711 IPR015760 -
Psa2g1921 720 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 73 711 - -
Psa2g1921 720 Gene3D - 196 370 IPR027417 -
Psa2g1921 720 Gene3D - 498 601 IPR036925 -
Psa2g1921 720 Hamap Translation initiation factor IF-2 [infB]. 8 706 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Psa2g1921 720 CDD IF2_mtIF2_II 374 469 IPR044145 -
Psa2g1921 720 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 198 368 IPR000795 GO:0003924|GO:0005525
Psa2g1921 720 CDD IF2_eIF5B 202 365 - -
Psa2g1921 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 389 IPR027417 -
Psa2g1921 720 SUPERFAMILY Translation proteins 604 705 IPR009000 -
Psa2g1921 720 TIGRFAM small_GTP: small GTP-binding protein domain 201 353 IPR005225 GO:0005525
Psa2g1921 720 TIGRFAM IF-2: translation initiation factor IF-2 126 703 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Psa2g1921 720 CDD mtIF2_IVc 609 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1921 Psa-Chr2 176934864 176939812 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1921 189 589 Eukaryotic Initiation Factors Gene Family AT1G76810 27.234 7.75e-29 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1921 K02519 - gmx:100781314 1172.53