Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1905 ATGGATCCTCCACCACCCCATGTCTCTAAAAATAAAAGAATATTGAAAATTGTATATGATGATCCTGATGCAACAGATTCTTCATCCGATGAAAGAAATAGTATTCTTGTAGATCCAACAATGAGGAAGAGAGTTATGCTTGAAATTGCAATTCCTAATCCTAATGTTTTTTGTGATCCAAAGGTTGATAATGGATTGAAGGAGCATAATAAGAATTGTGGAAAACAAAAGATTGCGGTGAAGCAACCGTCTTGCAAATACAAAGGTGTTCGATCGAGACCAGGGGGTCGATGGGCAGCAGAAATCCGTAATCCAGTTACTCGTTCACGTAATTGGCTTGGAACTTTCGACAGTGCGTTAGAGGCTTCTAAAGCTTATGAAGCTAAAAGACATGAAATTGAAACCATGTTTAAAAAGGAATCGTGTAATTGGAAGAGGAACATAAGCTTCAAAAATGTTGCTACTACTGAGCCTGAGCCTATAGTTGAAAGTGTTGAGGTTTCAAATGATGAAACTAATTCTTTGAATCCTTTGGAGATAGTGCAAGAACCGAATGTGGTTTCTTTAAAACCTTCAAACATAGTGGAAGAAGCGAATGTGGTTGCGAGTGTTGATACTTCGTCACAACTTGAATTGGATTGGTTAAAGTTTGATGACGGTTCAGAGCTGGACTTGAATGATCTTGATTATCTTGAAGACTTGAAAGATATTGATATTCCATTTGATTTTGATTACATTGGTGCTGAGTTTGCGGTTGATCATAAGATTTCTAGTAGGAAAGAACCTCCCAATAAATCCAAGCCATAA 807 0.373 MDPPPPHVSKNKRILKIVYDDPDATDSSSDERNSILVDPTMRKRVMLEIAIPNPNVFCDPKVDNGLKEHNKNCGKQKIAVKQPSCKYKGVRSRPGGRWAAEIRNPVTRSRNWLGTFDSALEASKAYEAKRHEIETMFKKESCNWKRNISFKNVATTEPEPIVESVEVSNDETNSLNPLEIVQEPNVVSLKPSNIVEEANVVASVDTSSQLELDWLKFDDGSELDLNDLDYLEDLKDIDIPFDFDYIGAEFAVDHKISSRKEPPNKSKP* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1905 268 MobiDBLite consensus disorder prediction 1 35 - -
Psa2g1905 268 PIRSF PTI6 5 253 IPR017392 GO:0003700
Psa2g1905 268 ProSiteProfiles AP2/ERF domain profile. 86 145 IPR001471 GO:0003700|GO:0006355
Psa2g1905 268 Pfam AP2 domain 85 135 IPR001471 GO:0003700|GO:0006355
Psa2g1905 268 SMART rav1_2 86 151 IPR001471 GO:0003700|GO:0006355
Psa2g1905 268 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 163 - -
Psa2g1905 268 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Psa2g1905 268 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Psa2g1905 268 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR-LIKE PROTEIN 7 163 - -
Psa2g1905 268 MobiDBLite consensus disorder prediction 1 28 - -
Psa2g1905 268 SUPERFAMILY DNA-binding domain 86 133 IPR016177 GO:0003677
Psa2g1905 268 CDD AP2 85 128 IPR001471 GO:0003700|GO:0006355
Psa2g1905 268 Gene3D AP2/ERF domain 85 143 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1905 Psa-Chr2 171660078 171660884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1905 6 239 AP2-EREBP Transcription Factor Family AT1G68550 32.083 9.92e-22 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa2g1905 AP2 2.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1905 - - mtr:MTR_5g057647 164.466