Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1886 ATGGCACCACCCAACCCGAAAGTAAAAGCGGCTTTCCGCGCAATGACGAACTTTGGCATTCATGAATCCAAAGTGAAACTAGTGTTAGAACCATCATCATATGGAAATGCTGCTCGGTTTATTAATCACAGATGTTTGGATGCAAATTTGATTGAGATCCCGGTTGAAGTTGAGAGTCCATCTCATCACTATTATCATATTGCCTTCTTCACATCCAGAAAAATTGAAGCACAGGAAGAGTTGACCTGGGATTACGGCATTGACTTTGATGAAGATGATCAATCACTCGAGCTCTTTAAATGCAAATGTGGCAGTAGATTCTGCAGGAATATTAAGCGGACAAATAGAATGGTTAGATCGTTCACTGATACGCGACAGATAGGCATTCTTACCTGA 396 0.4116 MAPPNPKVKAAFRAMTNFGIHESKVKLVLEPSSYGNAARFINHRCLDANLIEIPVEVESPSHHYYHIAFFTSRKIEAQEELTWDYGIDFDEDDQSLELFKCKCGSRFCRNIKRTNRMVRSFTDTRQIGILT* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1886 131 SMART set_7 6 92 IPR001214 GO:0005515
Psa2g1886 131 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 28 120 - -
Psa2g1886 131 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 4 29 - -
Psa2g1886 131 Gene3D SET domain 9 111 IPR046341 -
Psa2g1886 131 Pfam SET domain 33 86 IPR001214 GO:0005515
Psa2g1886 131 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 28 120 - -
Psa2g1886 131 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 4 29 - -
Psa2g1886 131 SUPERFAMILY SET domain 25 109 IPR046341 -
Psa2g1886 131 ProSiteProfiles SET domain profile. 1 86 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1886 Psa-Chr2 167074916 167075635 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1886 22 110 Su(var)3-9 homologs AT5G04940 36.559 2.86e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa2g1886 SET 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1886 - - cam:101500192 170.244