Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1884 ATGTATCGGATGATGGTCTTGTTTGTTTATCCTTCAGAAAAAAAACCTATGCCTTTTAAATGCAAGGATCTTCTTTCTTTCTGTTTCCCTGGAGGCTTGGAGGTTCGAGCTGTTGAGAGAACCCCTTCAAGGAAGATTTATCAGCTGAATATCCTAACAAGGATTTTAAAGTTAAGCAGATTGAGGATTGGATGTTTGGATGCAAATTTGATTGAGATCCCGGTTGAAGTTGAGAGCCCATCTCATCACTATTATCATATTGCCTTCTTCACATCCAGAAAAATTGAAGCACAGGAAGAGTTGACCTGGGATTACGGCATTGACTTTGATGAAGATGATCAATCACTCGAGCTCTTTAAATGCAAATGTGGCAGTAGATTCTGCAAGAATATTAAGCGGACAAATAGAATGCTAGATAAATCCAGCCCTTATATTAACAAGTTGCCTGATGCTCCTAAAGGAAAAACAGAAAACTTCAGTCGTGATTTCTCTTCAACACAGAGAAATTCCAGTTCATTGAAACAAGAAGATTTCCTACGGTTGATGGAGCACAAGTACGTCTCAAGTCTTGCTCAACCGGGTGAACCAGTTGGTGTGTTAGCTTCTCAGTCTGTGGGAGAACCAGCAACACAAATGACTTTGAATACTTTCCATCTTGCTGGTCGAGGTGAAATGAATGTGACACTTAGAATTCCCCGTTTGCACGAAATTGTGGTGGCAGCCTCAAATAACATCAAGACTCCCTTTATGTCATGCCCCCTGAGATCCAATAAATCTATGGAAAATGCTATCCGCCTTGCGGACAAAAATGAAGCTCCTTTCTTATCACTATTTCCCTGCGAAAATGAGCTATGA 855 0.4058 MYRMMVLFVYPSEKKPMPFKCKDLLSFCFPGGLEVRAVERTPSRKIYQLNILTRILKLSRLRIGCLDANLIEIPVEVESPSHHYYHIAFFTSRKIEAQEELTWDYGIDFDEDDQSLELFKCKCGSRFCKNIKRTNRMLDKSSPYINKLPDAPKGKTENFSRDFSSTQRNSSSLKQEDFLRLMEHKYVSSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLRIPRLHEIVVAASNNIKTPFMSCPLRSNKSMENAIRLADKNEAPFLSLFPCENEL* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1884 284 Pfam SET domain 76 106 IPR001214 GO:0005515
Psa2g1884 284 SUPERFAMILY SET domain 65 129 IPR046341 -
Psa2g1884 284 Gene3D SET domain 52 131 IPR046341 -
Psa2g1884 284 Pfam RNA polymerase Rpb1, domain 5 151 260 IPR007081 GO:0003677|GO:0003899|GO:0006351
Psa2g1884 284 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 65 137 - -
Psa2g1884 284 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 65 137 - -
Psa2g1884 284 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 166 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1884 Psa-Chr2 167055481 167058259 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa2g1884 RNA_pol_Rpb1_5 8.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1884 K02999 - gmx:100779532 199.904