Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1880 ATGTTTAAGATGGAAAAGAGAGGGAAAAAGGAAGAGAACAAAAACCCAGAAATGGAATCAAAGGTTGATAACAAAAAAGAGTTTTCTAGCGACGATGAATCATCACCAAGAGCGGTACTAGACACCCCTGAGTCTGACAACAGTGGAAGCAGCAGTTTCAGCAGCTCTTATTCGGCGGAGAATTCTCCGCCTTCACCACCGCCAATAGGAAAATCAGGTGGTGGAAAAGAAAGTCAAGTGCAGCAATGGAAAACAATGGTGGATGTTTTTAGGTTTAAGTCAGTGAGAAAATTAACGGCCATTCCTTTGTTTACTGCGGCTACGGTCGAAATAACTAGGAAAGGTTTCAGTAAGAAATTGGCTCGTAATCGAAGTGCGGAAGAAAGTCTTGATATTGGTGCTATTCCTAGGAAACCTTCTTGGAGGAACTTTGATTATGCAGAACTTGCTGCTGCTACTAATGATTTCAATTCTGAGAACCTGGTTGGAAAAGGTGGTCATGCTGAAGTATATAAAGGACAATTATCAGATGGTCAAGTTGTAGCTGTTAAGAGACTAATGAAGAACGACAAGGATTTCGCCGATAGAGCAGGCGATTTCTTGACTGAGCTTGGAATTATCGCGCACATTAACCACCCCAATGCAACACACCTTATTGGGTTTGGTATCGAAAAAGGCCTCTACTTTGTCCTACAATTAGCACCATATGGAAGCCTTTCTTCTTTGCTCTTCGGTTCTGAATGCTTAGAGTGGAAGACAAGGTACAAGGTAGCTATCGGAGTAGCCGAGGGATTGCATTATCTTCATGAAGACTGTCCGAGACGAATCATTCACAGGGACATCAAAGCCTCCAACATATTACTCAATGCTAATTATGAAGCTGAGATATCAGATTTTGGACTTGCAAAATGGCTTCCAGATAATTGGGCACACCATGTTGTTTTTCCTATAGAAGGAACATTTGGATATTTGGCTCCAGAGTACTTTATGCATGGTATTGTGGATGAGAAGACTGACGTGTTCGCGTTCGGGGTTTTGCTACTCGAACTTATAACAGGTCGTCGTGCAGTTGATTCAGATAGTAGGCAAAGTCTTGTGATTTGGGCCAAGCCACTTCTTGATTCAAACAATGTCAAGGAACTAACAGATCCCAGATTAGAAGAGAATTATGATCCTATTGAAATGAAGCGTTCCATGGCGACGGCTTCCTTGTGCGTCCACCATTCGACCTCCAAGCGTCCGTTCATGAAACAGGTTGTGCGGATATTGAAGGGCTTGGAAACAATTTTAGATTCCAAGCAAAATTCTGGTTCCACAAAATCACTCATGTTAGAGGCATGTGACCTAGAGGATTACACTTGTTCAAATTACTTGAAGGACCTAAACCGCCATAGGGAACTAGTCATGGAGTGA 1413 0.4239 MFKMEKRGKKEENKNPEMESKVDNKKEFSSDDESSPRAVLDTPESDNSGSSSFSSSYSAENSPPSPPPIGKSGGGKESQVQQWKTMVDVFRFKSVRKLTAIPLFTAATVEITRKGFSKKLARNRSAEESLDIGAIPRKPSWRNFDYAELAAATNDFNSENLVGKGGHAEVYKGQLSDGQVVAVKRLMKNDKDFADRAGDFLTELGIIAHINHPNATHLIGFGIEKGLYFVLQLAPYGSLSSLLFGSECLEWKTRYKVAIGVAEGLHYLHEDCPRRIIHRDIKASNILLNANYEAEISDFGLAKWLPDNWAHHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAVDSDSRQSLVIWAKPLLDSNNVKELTDPRLEENYDPIEMKRSMATASLCVHHSTSKRPFMKQVVRILKGLETILDSKQNSGSTKSLMLEACDLEDYTCSNYLKDLNRHRELVME* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1880 470 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 3 470 - -
Psa2g1880 470 Pfam Protein kinase domain 157 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g1880 470 SUPERFAMILY Protein kinase-like (PK-like) 140 429 IPR011009 -
Psa2g1880 470 Gene3D Phosphorylase Kinase; domain 1 116 231 - -
Psa2g1880 470 MobiDBLite consensus disorder prediction 1 80 - -
Psa2g1880 470 PANTHER OS08G0249100 PROTEIN 3 470 - -
Psa2g1880 470 SMART serkin_6 156 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g1880 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Psa2g1880 470 ProSitePatterns Protein kinases ATP-binding region signature. 162 184 IPR017441 GO:0005524
Psa2g1880 470 Gene3D Transferase(Phosphotransferase) domain 1 235 447 - -
Psa2g1880 470 ProSiteProfiles Protein kinase domain profile. 156 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g1880 470 MobiDBLite consensus disorder prediction 1 39 - -
Psa2g1880 470 MobiDBLite consensus disorder prediction 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1880 Psa-Chr2 166469197 166474250 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1880 129 453 Trihelix Transcription Factor Family AT5G38560 42.857 8.62e-76 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Psa2g1880 PK_Tyr_Ser-Thr 1.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1880 - - gmx:100818314 668.307