LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa2g1880	ATGTTTAAGATGGAAAAGAGAGGGAAAAAGGAAGAGAACAAAAACCCAGAAATGGAATCAAAGGTTGATAACAAAAAAGAGTTTTCTAGCGACGATGAATCATCACCAAGAGCGGTACTAGACACCCCTGAGTCTGACAACAGTGGAAGCAGCAGTTTCAGCAGCTCTTATTCGGCGGAGAATTCTCCGCCTTCACCACCGCCAATAGGAAAATCAGGTGGTGGAAAAGAAAGTCAAGTGCAGCAATGGAAAACAATGGTGGATGTTTTTAGGTTTAAGTCAGTGAGAAAATTAACGGCCATTCCTTTGTTTACTGCGGCTACGGTCGAAATAACTAGGAAAGGTTTCAGTAAGAAATTGGCTCGTAATCGAAGTGCGGAAGAAAGTCTTGATATTGGTGCTATTCCTAGGAAACCTTCTTGGAGGAACTTTGATTATGCAGAACTTGCTGCTGCTACTAATGATTTCAATTCTGAGAACCTGGTTGGAAAAGGTGGTCATGCTGAAGTATATAAAGGACAATTATCAGATGGTCAAGTTGTAGCTGTTAAGAGACTAATGAAGAACGACAAGGATTTCGCCGATAGAGCAGGCGATTTCTTGACTGAGCTTGGAATTATCGCGCACATTAACCACCCCAATGCAACACACCTTATTGGGTTTGGTATCGAAAAAGGCCTCTACTTTGTCCTACAATTAGCACCATATGGAAGCCTTTCTTCTTTGCTCTTCGGTTCTGAATGCTTAGAGTGGAAGACAAGGTACAAGGTAGCTATCGGAGTAGCCGAGGGATTGCATTATCTTCATGAAGACTGTCCGAGACGAATCATTCACAGGGACATCAAAGCCTCCAACATATTACTCAATGCTAATTATGAAGCTGAGATATCAGATTTTGGACTTGCAAAATGGCTTCCAGATAATTGGGCACACCATGTTGTTTTTCCTATAGAAGGAACATTTGGATATTTGGCTCCAGAGTACTTTATGCATGGTATTGTGGATGAGAAGACTGACGTGTTCGCGTTCGGGGTTTTGCTACTCGAACTTATAACAGGTCGTCGTGCAGTTGATTCAGATAGTAGGCAAAGTCTTGTGATTTGGGCCAAGCCACTTCTTGATTCAAACAATGTCAAGGAACTAACAGATCCCAGATTAGAAGAGAATTATGATCCTATTGAAATGAAGCGTTCCATGGCGACGGCTTCCTTGTGCGTCCACCATTCGACCTCCAAGCGTCCGTTCATGAAACAGGTTGTGCGGATATTGAAGGGCTTGGAAACAATTTTAGATTCCAAGCAAAATTCTGGTTCCACAAAATCACTCATGTTAGAGGCATGTGACCTAGAGGATTACACTTGTTCAAATTACTTGAAGGACCTAAACCGCCATAGGGAACTAGTCATGGAGTGA	1413	0.4239	MFKMEKRGKKEENKNPEMESKVDNKKEFSSDDESSPRAVLDTPESDNSGSSSFSSSYSAENSPPSPPPIGKSGGGKESQVQQWKTMVDVFRFKSVRKLTAIPLFTAATVEITRKGFSKKLARNRSAEESLDIGAIPRKPSWRNFDYAELAAATNDFNSENLVGKGGHAEVYKGQLSDGQVVAVKRLMKNDKDFADRAGDFLTELGIIAHINHPNATHLIGFGIEKGLYFVLQLAPYGSLSSLLFGSECLEWKTRYKVAIGVAEGLHYLHEDCPRRIIHRDIKASNILLNANYEAEISDFGLAKWLPDNWAHHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAVDSDSRQSLVIWAKPLLDSNNVKELTDPRLEENYDPIEMKRSMATASLCVHHSTSKRPFMKQVVRILKGLETILDSKQNSGSTKSLMLEACDLEDYTCSNYLKDLNRHRELVME*	471

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Psa2g1880	470	PANTHER	RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE	3	470	-	-
Psa2g1880	470	Pfam	Protein kinase domain	157	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Psa2g1880	470	SUPERFAMILY	Protein kinase-like (PK-like)	140	429	IPR011009	-
Psa2g1880	470	Gene3D	Phosphorylase Kinase; domain 1	116	231	-	-
Psa2g1880	470	MobiDBLite	consensus disorder prediction	1	80	-	-
Psa2g1880	470	PANTHER	OS08G0249100 PROTEIN	3	470	-	-
Psa2g1880	470	SMART	serkin_6	156	422	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Psa2g1880	470	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	276	288	IPR008271	GO:0004672\|GO:0006468
Psa2g1880	470	ProSitePatterns	Protein kinases ATP-binding region signature.	162	184	IPR017441	GO:0005524
Psa2g1880	470	Gene3D	Transferase(Phosphotransferase) domain 1	235	447	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa2g1880	Psa-Chr2	166469197	166474250	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa2g1880	129	453	Trihelix Transcription Factor Family	AT5G38560	42.857	8.62e-76	249

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Psa2g1880		PK_Tyr_Ser-Thr	1.3e-37	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa2g1880	-		-	gmx:100818314	668.307

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