Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1865 ATGGAATTTGAAGATCATGAGGAACAAGAAGAAGAGTTATGTATGGGTGCAGCGAGTTATGACTCTAACATCAACATCGGTGTCGGAAACGGAAAAGCAAGGTATAGAGAGTGTTTAAAGAATCATGCTGTCGGAATCGGTGGTCATGCTTTAGACGGTTGTGGCGAGTTTATGCCGGCGGGGAATGAAGGAAGTTTGGAATCGTTAAAATGTGCCGCGTGTAACTGTCACCGTAATTTCCACCGCAAGGAGTCGCCTGACTTCACCGCCGGGGATCCTTTTCTGTTGACACACCACCACCACCATGCGCTACCTCAGCCGCAGTTTGCGGCTTATTATCGAACTCCGGCTGGGTACTTGCATGTTTCCGGACAGCAGAGGACCGGGACTCTTGCTCTACCGTCGACCTCAGGCGGAGGAGGAGGCGGAGGGACGCAGAGTACGAGGGAGGATCAAGACGAAGACGTTTCGAATCCGAGCGGCGGTGGTTCGAGTAAGAAGCGACACCGAACAAAGTTCACGGTTGAACAGAAGGATAAGATGTTGGAATTAGCTGAGAAATTGGGGTGGAGAATTCAGAAACATGATGAAGGTTTGGTTCAAGAATTCTGCAATGAAAGTGGTGTTAAGCGTCATGTTCTTAAAGTTTGGATGCATAACAACAAACACACTCTTGGTAAGAAGCCCTAG 690 0.4884 MEFEDHEEQEEELCMGAASYDSNINIGVGNGKARYRECLKNHAVGIGGHALDGCGEFMPAGNEGSLESLKCAACNCHRNFHRKESPDFTAGDPFLLTHHHHHALPQPQFAAYYRTPAGYLHVSGQQRTGTLALPSTSGGGGGGGTQSTREDQDEDVSNPSGGGSSKKRHRTKFTVEQKDKMLELAEKLGWRIQKHDEGLVQEFCNESGVKRHVLKVWMHNNKHTLGKKP* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1865 229 MobiDBLite consensus disorder prediction 133 147 - -
Psa2g1865 229 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 20 228 - -
Psa2g1865 229 MobiDBLite consensus disorder prediction 133 174 - -
Psa2g1865 229 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 166 222 IPR006455 -
Psa2g1865 229 Gene3D - 151 227 - -
Psa2g1865 229 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 35 84 IPR006456 -
Psa2g1865 229 SUPERFAMILY Homeodomain-like 153 227 IPR009057 -
Psa2g1865 229 Pfam ZF-HD protein dimerisation region 33 85 IPR006456 -
Psa2g1865 229 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 34 84 IPR006456 -
Psa2g1865 229 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 20 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1865 Psa-Chr2 162809949 162811862 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1865 31 225 ZF-HD Transcription Factor Family AT4G24660 51.282 2.29e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Psa2g1865 ZF-HD_dimer 1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1865 - - gmx:100808910 326.635