Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1823 ATGGTTAAGACAGAGATCAACAAGATCAACAAAGAAAAATCAAAACCAATGCAACAAAAAACATTAACATCATCATCTTCATCAACATCAACAAATGCATCAAATGAGATGAAGAAAAAGTACAAAGGAGTTAGAATGAGGAGTTGGGGTTCTTGGGTATCAGAAATTAGAGCACCAAATCAGAAAACAAGAATATGGTTAGGTTCTTATTCAACCGCTGAAGCTGCAGCTAGAGCCTATGATGCAGCACTTTTATGTCTTAAAGGTTCATCAGCTTCAAATCTTAATTTCCCTTTAGAGAACTCTTCACATTTCATTCCTCAAGACAACATTGCTATGTCACCTAAATCAATCCAAAGAGTAGCTGCAGCTGCGGCGGCTGCAGATGCTGCATCTGCAGCGGCGACAGCTGCTTGTGGTGGTGTTGATAGTAAAAACAATGAAATTGTTATTAGCACCTCCCCAACATCTCCACCTAATCCAATTTCACCATCTTCATTGGTTTCATCTCCATCAATGTCATGTTCTCCTTCTGATCAAATTGATGATGATGTTTCACTTTTTTCATCTTTTGGGGCCTACACGAATGATCATCAAGCAACAAGTGAATCAATGGCTATGAATATGATGGATTGTTGGTATGGTTTTGATGGGTTAGAATCTCCACAACATTTTGATCAAATGCTAAATGGTTCTTTGTTTGATATCGATTCTACTCAAGTACTTGTTGATGACTGGTATGAAGAAGGTGACATTAACTTGTGGAGCTTCTACTAA 777 0.3797 MVKTEINKINKEKSKPMQQKTLTSSSSSTSTNASNEMKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSASNLNFPLENSSHFIPQDNIAMSPKSIQRVAAAAAAADAASAAATAACGGVDSKNNEIVISTSPTSPPNPISPSSLVSSPSMSCSPSDQIDDDVSLFSSFGAYTNDHQATSESMAMNMMDCWYGFDGLESPQHFDQMLNGSLFDIDSTQVLVDDWYEEGDINLWSFY* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1823 258 ProSiteProfiles AP2/ERF domain profile. 40 98 IPR001471 GO:0003700|GO:0006355
Psa2g1823 258 MobiDBLite consensus disorder prediction 16 37 - -
Psa2g1823 258 Pfam AP2 domain 40 89 IPR001471 GO:0003700|GO:0006355
Psa2g1823 258 SMART rav1_2 40 104 IPR001471 GO:0003700|GO:0006355
Psa2g1823 258 MobiDBLite consensus disorder prediction 1 15 - -
Psa2g1823 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 23 257 - -
Psa2g1823 258 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Psa2g1823 258 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Psa2g1823 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 23 257 - -
Psa2g1823 258 Gene3D AP2/ERF domain 39 100 IPR036955 GO:0003700|GO:0006355
Psa2g1823 258 MobiDBLite consensus disorder prediction 1 39 - -
Psa2g1823 258 SUPERFAMILY DNA-binding domain 40 100 IPR016177 GO:0003677
Psa2g1823 258 CDD AP2 39 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1823 Psa-Chr2 155127107 155128575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1823 41 257 AP2-EREBP Transcription Factor Family AT1G21910 45.701 6.47e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa2g1823 AP2 5.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1823 - - mtr:MTR_5g058470 323.553