Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1806 ATGGCGGCTTCGTCTCTAAATCATCACATTAGGGTAGATACGAAAATTTGGAGATTGTGCGCGGAACCATTTCTCTTCACTCCATTGGTTAACTCTCGTGTATACTATTTTCCTGAGGGACATGGGCTACACTCAGGTGGTGAAGATGTCACGCCAAGTTTAATGACCGAACTTCATCCTTCGTCTCACTTATGTGAGATTGTTACCATTGATTATCTTGCCGATGCAGAGTCGGAAGAATTCTTCTTACAACTCACTCTTAAACCAGTAGTTCATATTGATCATCAAGAACCTATCTTGGAAGATGGAAACATAGGCGTTGAGGGTGTAGTTTTAAAACTACTAACACCTACCGACGTCAACACGGAACTGAGGCTCCCCACTAACGGAAATGATGTATTTTCAGATCATGTTGGCAATGACGGGGACTCCAATACTTGTGTAGAGGTTTGCGTGAAAGATCTTCGCAACACCAATTGGCGTTTCCACCATATCCATCAACAGATAAACCGACGTTATGTACTTTCGGCTGGCTGGAGAAACTTCATTAAAGAAAAAAAGCTAGTCGTTGATGACTCTGTAATTTTTCTGAAAAAATCAGATCGAACTATATTCGTAGGAATACGAAGAAAGAGCAATATCGCTGCAAAGACTGCTTCAGAGAAAATTAAAATCAAAAATGATCAAATTTTTGATCAAATTCGCGTAAACTCGCATAACGTCATGAAGGTGTTAACTCATATTGTTAATCTCGAGCCATTTGAAGTTCAATTTTATCCCGGCTTTTGCGATTTCTTAGTGGATCCAAACTATATTGAAGCAAGTAGACAGGTGGTCTGGTTTGAAGGAATGCGGGTTACTTATCGTAGGAAAGATCAAACTTCCATCACTGGTAGGATTGTTCAAGTGTATTCTCAGCCCAATCAGCCCAACGACATTCGTTGGGGAATGTTAAAGATGGAATGGGAAGATGGTCGAATCGGGGATCCTGCCGCTGTTAGTCCCTGGGAAGTTCAAGTAATTCCAGAGGATGTTTAG 1038 0.4114 MAASSLNHHIRVDTKIWRLCAEPFLFTPLVNSRVYYFPEGHGLHSGGEDVTPSLMTELHPSSHLCEIVTIDYLADAESEEFFLQLTLKPVVHIDHQEPILEDGNIGVEGVVLKLLTPTDVNTELRLPTNGNDVFSDHVGNDGDSNTCVEVCVKDLRNTNWRFHHIHQQINRRYVLSAGWRNFIKEKKLVVDDSVIFLKKSDRTIFVGIRRKSNIAAKTASEKIKIKNDQIFDQIRVNSHNVMKVLTHIVNLEPFEVQFYPGFCDFLVDPNYIEASRQVVWFEGMRVTYRRKDQTSITGRIVQVYSQPNQPNDIRWGMLKMEWEDGRIGDPAAVSPWEVQVIPEDV* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1806 345 Pfam B3 DNA binding domain 113 211 IPR003340 GO:0003677
Psa2g1806 345 PANTHER AUXIN RESPONSE FACTOR 17 9 342 - -
Psa2g1806 345 SMART B3_2 111 212 IPR003340 GO:0003677
Psa2g1806 345 CDD B3_DNA 113 210 IPR003340 GO:0003677
Psa2g1806 345 Gene3D - 112 212 IPR015300 -
Psa2g1806 345 SUPERFAMILY DNA-binding pseudobarrel domain 112 212 IPR015300 -
Psa2g1806 345 ProSiteProfiles B3 DNA-binding domain profile. 149 212 IPR003340 GO:0003677
Psa2g1806 345 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 342 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1806 Psa-Chr2 153684740 153685875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1806 12 341 B3 DNA Binding Superfamily AT4G30080 26.943 5.69e-35 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa2g1806 B3 3.2e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1806 - - gmx:100804933 157.918