Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1800 ATGCCAATGAACCATGGCCAAAGCCAACAATCCACAAGGTGGTATAAGCTATGCTTTATGCCCCCGAGTGATGATAGTTCAGATGATTCTGACACCGAATCTGTAGTCATAGCTCCAAGTACTTCAACTCAAACTAGTACATGGCAAGAACCTTCTCCACCACATTCACCACTACATCCAGAACCTGATATCAACTGGCTTACTCTTCCACCGCCACCACCTCCGCCTTTTTTCACACCACTATCGCCACCACAAAGGTCTTCACAAATGCCATCACTATCACCACCACCAAATCCAGAACTTCAACTCAACTGGGAGAGGTATTTTCCACCAGCGCCTCCTCCTCTTAGTTTGCTTAGACAACTGGAGGATGCAAACTCAGAACCTCGAATTAACATGCAATCTTTACAACCACCACCGCCTCCTCCTCTGCCACCACTACCACAGGATTCAAGGGACACTGTATATCGCTTTACTGATAATGTTTCCCCTTCCTTGATCGAGCAAGTTCGACCTGGTGTCAATCAAAGTGAGTTCCTTCGAATTCCAGATAGTGTCATCAATGCAATTCACATGGTGACAATCTCAGAGTTGCATGAAAGAGATGAACTCTCACAGTGTCCTATTTGCATGGAGGAGTTTAAACTGGGCGATCAGGCATGTCAGCTACCCTGCAACCATAGGTACAAGTTTGAATGTATTCTTCGCTGGCTTCACAACAACACAACATGTCCTGTTTGCAGACTTCAGTTAGAGGGTTTTACAGGAAAAGGTTGTTCTTATAACATAAATGATGACGGTGACAGTGATGATGGTGGTGATAATGATAGTTTAGACCTTGAAGCTCAAATTCCACCACAAGTAAATATTAGTTTGGAAGACCTTTTTCAATTTTCACCACATTCACAAGTTACAGTAGATGGTGCAGATCACAACTCTGATGAAGGTGACTATGACAGTGCATGTGATGATTTAGATGATGCCCATGAAGATGGAGAATGA 1002 0.4371 MPMNHGQSQQSTRWYKLCFMPPSDDSSDDSDTESVVIAPSTSTQTSTWQEPSPPHSPLHPEPDINWLTLPPPPPPPFFTPLSPPQRSSQMPSLSPPPNPELQLNWERYFPPAPPPLSLLRQLEDANSEPRINMQSLQPPPPPPLPPLPQDSRDTVYRFTDNVSPSLIEQVRPGVNQSEFLRIPDSVINAIHMVTISELHERDELSQCPICMEEFKLGDQACQLPCNHRYKFECILRWLHNNTTCPVCRLQLEGFTGKGCSYNINDDGDSDDGGDNDSLDLEAQIPPQVNISLEDLFQFSPHSQVTVDGADHNSDEGDYDSACDDLDDAHEDGE* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1800 333 MobiDBLite consensus disorder prediction 53 82 - -
Psa2g1800 333 CDD RING-H2_PA-TM-RING 206 248 - -
Psa2g1800 333 ProSiteProfiles Zinc finger RING-type profile. 207 248 IPR001841 -
Psa2g1800 333 SMART ring_2 207 247 IPR001841 -
Psa2g1800 333 SUPERFAMILY RING/U-box 186 251 - -
Psa2g1800 333 Pfam Ring finger domain 206 248 IPR001841 -
Psa2g1800 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 146 272 - -
Psa2g1800 333 MobiDBLite consensus disorder prediction 1 16 - -
Psa2g1800 333 MobiDBLite consensus disorder prediction 319 333 - -
Psa2g1800 333 MobiDBLite consensus disorder prediction 1 97 - -
Psa2g1800 333 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 146 272 - -
Psa2g1800 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 253 IPR013083 -
Psa2g1800 333 MobiDBLite consensus disorder prediction 303 333 - -
Psa2g1800 333 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1800 Psa-Chr2 151424212 151425778 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1800 185 266 C3H Transcription Factor Family AT1G68180 37.931 4.57e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1800 K11982 - ccaj:109817940 169.088