Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1781 ATGTCTTCTCAAGAGGTTGATCATTGGAATAATGGTGTCCACTTTTTCAAGATTATTCTTGAAAGTACCCTCCAAGAAGAAAAACTGAGAGTTCCTATCAGTTTTGTGAAAGGGTATTGGAAGGGAATAGAAAACCCAGTTACCCTAAGGCTACCAAATATGATTCAAAAGAAAGTTTTTTGGGAGAAAAATAGTGATTATGAAGTTTTGTTTTACAATGGTTGGAAAGAATTTGCTAATTATTTATCTATGGGGGATTCACAACTTTTGGTCTTTCAATATCAAGAAAACTCTCTTTTTAATGTGATTGTATTCGGTAAAAACGGATTAGAAATAAAATATGATTTACCAGAGATTAATGAAGAATCTATTGAGATTGAAGAGACAGAAAATTCTTTGCAAATTATTGGAAGGCCAAAATCTTCAAAAGTTTTTAAGAGGAAAATCAATCCAAAAGAATCAAAACATGAGAAGAGAAAAGTCCAAAAGAATGGAAGATCCCATAATCTTATAGATGTGGACAATGATCGGAAGGAGAGAAGTAGGGTTTTGTATGATAAAGTGAAGAACACATTTCACTCTAACAAGGACTTCTTTATATGCATGATTCAAAAGACATCCATCGAAAGAGATCTCTTGGGCATACCAAGTGAATTTGGTAAGAAATTTTTGCATGGAATGCAAGGAAGAAATGTTACTCTTTTTATTAACCCTAAGAAAACATGGATTGTCAATTTGAAATTCACTTCAGATCATCGATATACACTAAATGGTGGTTGGAGTAAATTTCGGACTCATAATAATCTGAAATTTGGCGATATATGTGTTCTTATGCTTAATAAAACCAAAGGAAAAATTTCATTCAAAGTTACTATTTTCTCTCTAGAAAATGATATTTGA 900 0.3167 MSSQEVDHWNNGVHFFKIILESTLQEEKLRVPISFVKGYWKGIENPVTLRLPNMIQKKVFWEKNSDYEVLFYNGWKEFANYLSMGDSQLLVFQYQENSLFNVIVFGKNGLEIKYDLPEINEESIEIEETENSLQIIGRPKSSKVFKRKINPKESKHEKRKVQKNGRSHNLIDVDNDRKERSRVLYDKVKNTFHSNKDFFICMIQKTSIERDLLGIPSEFGKKFLHGMQGRNVTLFINPKKTWIVNLKFTSDHRYTLNGGWSKFRTHNNLKFGDICVLMLNKTKGKISFKVTIFSLENDI* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1781 299 SUPERFAMILY DNA-binding pseudobarrel domain 193 294 IPR015300 -
Psa2g1781 299 ProSiteProfiles B3 DNA-binding domain profile. 198 296 IPR003340 GO:0003677
Psa2g1781 299 SMART B3_2 198 296 IPR003340 GO:0003677
Psa2g1781 299 SMART B3_2 15 108 IPR003340 GO:0003677
Psa2g1781 299 ProSiteProfiles B3 DNA-binding domain profile. 14 108 IPR003340 GO:0003677
Psa2g1781 299 SUPERFAMILY DNA-binding pseudobarrel domain 13 109 IPR015300 -
Psa2g1781 299 PANTHER B3 DOMAIN-CONTAINING 10 294 - -
Psa2g1781 299 CDD B3_DNA 198 294 IPR003340 GO:0003677
Psa2g1781 299 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 10 294 - -
Psa2g1781 299 Gene3D - 9 109 IPR015300 -
Psa2g1781 299 Pfam B3 DNA binding domain 198 293 IPR003340 GO:0003677
Psa2g1781 299 Gene3D - 176 297 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1781 Psa-Chr2 146424622 146426620 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1781 15 299 B3 DNA Binding Superfamily AT3G18990 26.377 4.15e-21 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa2g1781 B3 9.5e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1781 - - mtr:MTR_4g119990 389.808