LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa2g1738	ATGGGTCGTGTTAAACTTGAGATAAAAAGAATAGAGAATACAACGAATCGACAAGTTACATTTTCAAAACGTAGAAATGGTCTCATTAAGAAAGCTTATGAGTTATCTATCCTATGTGATATTGATATTGCACTTGTAATGTTTTCTCCATCAAATCGTCTTAGTCATTTTTCCGGTAAAAGAAGGATAGAGGATGTTTTAACTCGTTATATTAATCTTCCTGATCAAGAAAGAGATAATGCTGTAAGTTTTCCTGAGGTGCCATACAGAAGGGGAATTCAGAACAAGGAGTATTTGCTCAGGACACTTCAACAGTTGAGGAGTGAAAATGACATAGCTCTTCATATGTCCAATCCGGGAGACATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTCAGTAGATTACAACAACAACTTCAAATAGCAGAGGAGCAGATAAGAATATATGAACCCGACCCATTAAAGATGACATCTATGACTGAGCTTGAAACAAGTGAAAAAAATATAGTTGAAACATTGGCACGTGTCATGCAGAGAAAGGAACTTTTGTTGAACAACCATTTATCTTCGTATGATCCATCTGGTATTCAGGGGATGTCAAGCACTTTCGAAAATGTAGGTTGGCTACAGGATGGTAGTCAGAACCATCAAAATATTTTTGATGCATCAGCTCCTATGGATCCTCTCAGGGATTTGTCCTCTACAGTATACGGTTCATTTTCACAAGGAACCAGTTCAAACGTTGATCCAAGAGGCATAGGTGAATGCCACGTGGCAAATACAAACGACTCAAATCTTCAAACATGGCCACAAGGATACACATTATATCCACATCATCAACAACATCAACATCAACAACATCATCATATGCAACATGACATGGTTGGAACTGATCATCATCAACATCATCATCACCATAATATTCAAGATATGATGCCACATGGACAAATGAATATGCCTATCACTGCCTCACAAGTTGAACCACCCAAAAATGAATCATCAGATCAATATGATCAATGTAAACAACCTAATCATCAGCTTAATTCATGCTCAATGACACATACTAATTAA	1074	0.3706	MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALVMFSPSNRLSHFSGKRRIEDVLTRYINLPDQERDNAVSFPEVPYRRGIQNKEYLLRTLQQLRSENDIALHMSNPGDINSEIEELQQEVSRLQQQLQIAEEQIRIYEPDPLKMTSMTELETSEKNIVETLARVMQRKELLLNNHLSSYDPSGIQGMSSTFENVGWLQDGSQNHQNIFDASAPMDPLRDLSSTVYGSFSQGTSSNVDPRGIGECHVANTNDSNLQTWPQGYTLYPHHQQHQHQQHHHMQHDMVGTDHHQHHHHHNIQDMMPHGQMNMPITASQVEPPKNESSDQYDQCKQPNHQLNSCSMTHTN*	358

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa2g1738	357	Gene3D	-	13	86	IPR036879	GO:0003677\|GO:0046983
	Psa2g1738	357	Coils	Coil	353	357	-	-
	Psa2g1738	357	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	275	-	-
	Psa2g1738	357	Coils	Coil	126	146	-	-
	Psa2g1738	357	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Psa2g1738	357	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Psa2g1738	357	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Psa2g1738	357	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Psa2g1738	357	CDD	MADS_MEF2_like	2	75	IPR033896	GO:0000977\|GO:0045944
	Psa2g1738	357	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Psa2g1738	357	SUPERFAMILY	SRF-like	2	79	IPR036879	GO:0003677\|GO:0046983
	Psa2g1738	357	MobiDBLite	consensus disorder prediction	327	357	-	-
	Psa2g1738	357	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL104	1	275	-	-
	Psa2g1738	357	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Psa2g1738	357	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa2g1738	Psa-Chr2	142983233	142997477	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa2g1738	1	324	Type I MADS-box Gene Family	AT1G22130	55.422	1.60e-115	337

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Psa2g1738		SRF-TF	3e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa2g1738	-		-	gmx:100305913	521.546