Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1710 ATGGCAGGTAGAATGGATTTCTTCAACAATTCACAAGATCCATTTAATGGTGAGTTAATGGAAGTACTTGAACCTTTTATGAAGAGTTCTTCCACTACTACACCCTCTTCATCTTTATCTACACCTCCTTCTCTAAATTCACACCTCCCTTCAACTTCATCTCCATTTTACTCTTCTACCCCTACCTATTTCACCCCCTCTTTTTCCTCCCCTTCTTTTCCTCCTCCACAGCCCAATTTATACACAGAAAACGGTTATTGTTCATCCATGATGAATTACCAATTTCCCTCGGGTAATTCTTCATCAACCAGCCAAAATTTCATAGGCTTTGAACAACCACAACCAAATTCTGCAATTGGGTTAAACAACTTAACTCCATCTCAAATCAATCAGATCCAAGCCCAGATCCAGTTTCAGTCTCAACAAGTCAATCCAAATTTGAGCTTTCTTGGGCCGAAGCCCGTCCCGATGAAACAGCCCGGTGCACCTCCAAAGCCGACGAAGCTTTACAGAGGTGTAAGGCAGAGACATTGGGGAAAATGGGTGGCCGAGATAAGATTGCCCAAGAACAGAACAAGGCTCTGGCTTGGAACTTTTGATACTGCTGAAGAAGCTGCTTTAGCTTATGATAGAGCTGCTTATAGATTAAGAGGTGATTTCGCTAGGCTTAATTTCCCAAACATGAAAGACCAACAAGGTATGTTTGGCGAGTTCAAGACTTTGCATTCGTCTATTGATGCTAAACTTGATGCTATTTGTGAGAGTTTAGGCGGTGATGATGCGAAGAAATCAGGGAAAGTGGAGAAAAAAGTGAAAGCATCTAAGAAGTGTTTGAAAAAAGAGGCTCAAGTTCAAGTTCAACCGATTGTTGTTGAGGATGATGATAACAATAAGAAGGCTGTTGTTGAAAACTCTCTGTGTTGTTCTAGTGAAGGGTCTGATGATTCTTCTCTACTTTCTGATCTTACTTTTGGTGATTCTGGTGAGCCAGAGTGGGAACAGTTTAATCTGCAGAAGTTTCCTTCTTATGAGATTGATTGGGATTCTCTTTGA 1053 0.4112 MAGRMDFFNNSQDPFNGELMEVLEPFMKSSSTTTPSSSLSTPPSLNSHLPSTSSPFYSSTPTYFTPSFSSPSFPPPQPNLYTENGYCSSMMNYQFPSGNSSSTSQNFIGFEQPQPNSAIGLNNLTPSQINQIQAQIQFQSQQVNPNLSFLGPKPVPMKQPGAPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDRAAYRLRGDFARLNFPNMKDQQGMFGEFKTLHSSIDAKLDAICESLGGDDAKKSGKVEKKVKASKKCLKKEAQVQVQPIVVEDDDNNKKAVVENSLCCSSEGSDDSSLLSDLTFGDSGEPEWEQFNLQKFPSYEIDWDSL* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1710 350 PRINTS Ethylene responsive element binding protein signature 170 181 IPR001471 GO:0003700|GO:0006355
Psa2g1710 350 PRINTS Ethylene responsive element binding protein signature 192 208 IPR001471 GO:0003700|GO:0006355
Psa2g1710 350 ProSiteProfiles AP2/ERF domain profile. 169 226 IPR001471 GO:0003700|GO:0006355
Psa2g1710 350 CDD AP2 168 227 IPR001471 GO:0003700|GO:0006355
Psa2g1710 350 SUPERFAMILY DNA-binding domain 169 226 IPR016177 GO:0003677
Psa2g1710 350 Pfam AP2 domain 170 218 IPR001471 GO:0003700|GO:0006355
Psa2g1710 350 Gene3D AP2/ERF domain 169 228 IPR036955 GO:0003700|GO:0006355
Psa2g1710 350 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 349 - -
Psa2g1710 350 SMART rav1_2 169 232 IPR001471 GO:0003700|GO:0006355
Psa2g1710 350 MobiDBLite consensus disorder prediction 28 48 - -
Psa2g1710 350 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1710 Psa-Chr2 140940106 140942166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1710 1 350 AP2-EREBP Transcription Factor Family AT1G78080 44.648 4.24e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa2g1710 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1710 K09286 - gmx:732559 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1710 2 140940106 140942166 Psa5g3197 5 248920582 248923320 PCT