Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1708 ATGAATCGAAACGATCTTCAACCTCTACCATTGCTAAGTAGCTTCTTAGATTCAACTCCTCAACCATCTTTTCTACAAAACGAGACTCATAAAGCATGTTTGAATCAAGATGAAGATGTCACAGTGGCCTTACATATTGGTCTCCACCACAGTTCAACTGAAACACCAACTGAGAATGTTCCAAATTCTGGTCCAAGCAATTACTGGATACCAACTGAAGAGCAGATTCGCATCGGTTTGAGTCATTTCTCTTGTTCCGTTTGTCCCAAAACTTTCAACCGTTACAACAACCTTCAGATGCATATGTGGGGACACGGATCGCAGTATCAAAGAGGACCGGACTCGCTGAAAAGAACTCATCCGCGACCAATGCTGGACATTCCATGCTATTGTTGTTCAGAGGGGTGTAAGAATAATATTGGGCATCCACGAGCGAAGCCATTGAAAGATTTCAGAACATTGCAGACGCATTACAAGAGGAAGCACGGTTCCAAAAGCTTTACTTGTCGAAAATGTGGGAAATGTTTGGCAGTGAAAGGTGATTGGAGAACTCATGAGAAAAACTGTGGGAAGCGTTGGCTTTGTATCTGTGGTTCAGATTTCAAACACAAGAGGTCATTGAAAGATCATGTCAAAGCTTTTGGATTTGGTCATGGTCCTTTTTCTTCTTCCTCTGATGGCATTTGA 687 0.4221 MNRNDLQPLPLLSSFLDSTPQPSFLQNETHKACLNQDEDVTVALHIGLHHSSTETPTENVPNSGPSNYWIPTEEQIRIGLSHFSCSVCPKTFNRYNNLQMHMWGHGSQYQRGPDSLKRTHPRPMLDIPCYCCSEGCKNNIGHPRAKPLKDFRTLQTHYKRKHGSKSFTCRKCGKCLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHVKAFGFGHGPFSSSSDGI* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1708 228 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Psa2g1708 228 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 5 222 - -
Psa2g1708 228 PANTHER ZINC FINGER PROTEIN WIP2 5 222 IPR043584 GO:0003700|GO:0010468
Psa2g1708 228 Pfam Zinc finger, C2H2 type 83 102 IPR013087 -
Psa2g1708 228 SMART c2h2final6 167 187 IPR013087 -
Psa2g1708 228 SMART c2h2final6 83 105 IPR013087 -
Psa2g1708 228 SMART c2h2final6 130 162 IPR013087 -
Psa2g1708 228 SUPERFAMILY beta-beta-alpha zinc fingers 75 105 IPR036236 -
Psa2g1708 228 Gene3D Classic Zinc Finger 82 105 - -
Psa2g1708 228 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1708 Psa-Chr2 140855500 140856266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1708 1 223 C2H2 Transcription Factor Family AT1G34790 60.000 6.39e-97 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa2g1708 zf-C2H2 0.00079 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1708 - - cam:101514022 402.134