Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1677 ATGATAATGAAGTTCATAACTCTAGTATATACTCATCTCAAATGGATATTAGATATTCTTACATATCATCCCTTCTATAAGCTCCATGATTTTGATCACTTTCCAATAATGGAAGAGATGAACAATATATGTTATTATGAACATACGCATGATGACTCACAGGAAGATGTAGAATGTTCAGTTTGTCTCTGCAAAATAGAAGAAGGAGATGAGATTAGAGTATTGAGGTGTCAACATATGTATCACAGACACTGTTTGGACAAATGGGTTGCTTTCAAAAACCATACTTGTCCTATTTGCAGAGAGTCAATAAGAGCAGAAAGGGAAATCACTGAGCTTGGAACTGAAGTTCTATCATTTAATTTTTGTGCAATCCGTAGTGATAGAGATTGTGATGATTGGTGGATACGTTGA 414 0.3454 MIMKFITLVYTHLKWILDILTYHPFYKLHDFDHFPIMEEMNNICYYEHTHDDSQEDVECSVCLCKIEEGDEIRVLRCQHMYHRHCLDKWVAFKNHTCPICRESIRAEREITELGTEVLSFNFCAIRSDRDCDDWWIR* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1677 137 Pfam Ring finger domain 58 101 IPR001841 -
Psa2g1677 137 SMART ring_2 59 100 IPR001841 -
Psa2g1677 137 ProSiteProfiles Zinc finger RING-type profile. 59 101 IPR001841 -
Psa2g1677 137 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 129 - -
Psa2g1677 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 111 IPR013083 -
Psa2g1677 137 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 2 129 - -
Psa2g1677 137 SUPERFAMILY RING/U-box 39 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1677 Psa-Chr2 136096009 136096839 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1677 54 117 C3H Transcription Factor Family AT2G04240 43.750 1.36e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1677 K16282 - mtr:MTR_3g463010 167.548