Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1666 ATGGCTGATTCACTCTCAGTTAATGTTGGTTCATTACATAACCTTGAATTAGATGCTAAACAAGCAAAAACTATCACCAATGAGGCTAAACACTTTGCATCTAGCATCCAAAAGGCTATTGCTGAATTTGTGGGTACATATGTTCTTATATTTGTTGGTTGTGGAGCTGCTCTTGTCAATGCGAGGTTACCAATCACAGTAGTTGGCATAGCAATTGTTTCGGGTTTAGCTTTAACCGTCGCTATATATTCGGTTGGTCATGTCTCTGGTGGTCATTTCAATCCTGCCGTCACAATTGCGTTGGCCGCCGTCCAAAAAATCCAATTCAAACTTGTGCCTGTTTATGTGGTGTGTCAGATAATGGGTGGAACATTGGCCACTCTCACTTTGAAAGTGTTGTATCATAACAAGGTGGATATTGGTGTAACACTCACCCAATATTCAAATTCAACTTCTGACCTTGAAGCATTGTTGTGGGAATCCATAATCACTTTCATATTGATGCTTACTATTTGTGGTGTTGCCACTGATCACAGAGGAAGCAAAGAACTTGCTGGAGTTGCTATAGGCATTTCAGTTCTGATTAATATCATCATTGCCGGGCCTATTACGGGAGCTTCGATGAATCCTGCGAGGAGTTTAGGTCCTGCCATAGTATCAGGCAATTACAAGAAAATTTGGGTTTATATCATAGGTCCAACTATTGGAGCAGTCTTTGCAAGTGTACTTTACACTTTCCTAAGAGTAACAAAACCAACGCAACAAGAACTACCATATATCACATGTGAAATACCATAA 798 0.401 MADSLSVNVGSLHNLELDAKQAKTITNEAKHFASSIQKAIAEFVGTYVLIFVGCGAALVNARLPITVVGIAIVSGLALTVAIYSVGHVSGGHFNPAVTIALAAVQKIQFKLVPVYVVCQIMGGTLATLTLKVLYHNKVDIGVTLTQYSNSTSDLEALLWESIITFILMLTICGVATDHRGSKELAGVAIGISVLINIIIAGPITGASMNPARSLGPAIVSGNYKKIWVYIIGPTIGAVFASVLYTFLRVTKPTQQELPYITCEIP* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1666 265 Pfam Major intrinsic protein 34 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa2g1666 265 SUPERFAMILY Aquaporin-like 33 255 IPR023271 -
Psa2g1666 265 PANTHER MAJOR INTRINSIC PROTEIN 16 256 - -
Psa2g1666 265 CDD MIP 37 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa2g1666 265 ProSitePatterns MIP family signature. 92 100 IPR022357 -
Psa2g1666 265 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa2g1666 265 PRINTS Major intrinsic protein family signature 74 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa2g1666 265 PRINTS Major intrinsic protein family signature 111 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa2g1666 265 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa2g1666 265 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa2g1666 265 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa2g1666 265 TIGRFAM MIP: MIP family channel proteins 41 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa2g1666 265 PANTHER AQUAPORIN NIP2-1 16 256 IPR034294 -
Psa2g1666 265 Gene3D Glycerol uptake facilitator protein. 9 257 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1666 Psa-Chr2 133902470 133903883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1666 37 257 Major Intrinsic Protein MIP AT5G37820 48.889 1.51e-68 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1666 K09874 - gmx:100798380 380.563