Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1651 ATGGCTTATCCACATTACCGATCACAGTTTGGAGACACAACATTCACTAAGGTTTTTGTTGGAGGACTAGCCTGGGAAACTCCAACCGATGAAATGAGGACATATTTTGAACAATTTGGTGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGATACGGATTTGTAACATTTCGCGATCCAGAATCAGCAAGAAGAGCTTGTGCTGATCCAAATCCAGTAATTGATGGAAGAAGAGCTAATTGTAACATTGCTTCTCTAGGACGTCCTAGACCATCACCACCAAGAGGAAGAGGTAGTACATATCAAGGTGGGGGAGTTGGAGTAGGGACAGGAGCGGCAGCGGCAGCAGTTGGGTACGGTGGAGTTCCGGCGGGAGGGGCAGCGCAAATGGCAGGAGGAGCAGCAACACCAGTAATGTACCAACCATATGGCTACCCCACCTACACTCCTGAATATGGGTACCATCAAGCCACAATGTATAACCCTCAGATTCAGCAAGCACAATACTATCAACAAGTCTATGGACCATCAACTTCAACTATGGCCTCACCATATTATTATGGCTATTCTGTGCAACCAGCTGCACCAAGGGGTACATTTTCTACCCCCCAACCACATCGCATACCAGCAGGACCATCCTATCTATACTACCCTACTACACCGATCGAAGGCGCTTCCTTCTCTGCTGCGTATCGTCCGTATCAACAGCAACCTGTAATAAGGCACCCTTCTCCAACCGATTCACAGACTCAGCAACGTACCTCATCGGAGACAGCATCTGGAGTAGTTATAACTTCGGAAAGTTCAAATACTCAAGGGAAGAACAACTAA 852 0.4636 MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGSTYQGGGVGVGTGAAAAAVGYGGVPAGGAAQMAGGAATPVMYQPYGYPTYTPEYGYHQATMYNPQIQQAQYYQQVYGPSTSTMASPYYYGYSVQPAAPRGTFSTPQPHRIPAGPSYLYYPTTPIEGASFSAAYRPYQQQPVIRHPSPTDSQTQQRTSSETASGVVITSESSNTQGKNN* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1651 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Psa2g1651 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Psa2g1651 283 Gene3D - 3 113 IPR012677 -
Psa2g1651 283 SUPERFAMILY RNA-binding domain, RBD 9 114 IPR035979 GO:0003676
Psa2g1651 283 MobiDBLite consensus disorder prediction 246 283 - -
Psa2g1651 283 PANTHER GEO13361P1-RELATED 1 272 - -
Psa2g1651 283 SMART rrm1_1 17 89 IPR000504 GO:0003723
Psa2g1651 283 PANTHER - 1 272 - -
Psa2g1651 283 MobiDBLite consensus disorder prediction 240 283 - -
Psa2g1651 283 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1651 Psa-Chr2 132130345 132134543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1651 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 4.95e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1651 K25006 - gmx:100787086 392.119