Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1622 ATGGAGAAATCACAACACGTAGTAGACGAAAACTTCCCACTCTTCAAACCATCTCTCAAGCCCTCCATAAATCCTCCCCCCGCCACTACTATTATCCCTCAAAACGACGTGGTTACCCATGAAAACCCTAACTCCATCACCGAAAACACCGCCACGTTCTCCGAGCTCGGACTCTCTGAATGGGCGGTGAAGACTTGCAAGGAACTCAGAATGTTAAAGCCACGCCGAGTGCAGCAGTACTGCATCCCGAAGATTCTAGAAGGCCGTCATGTAATTGGAATCGACGAGACTGGTAGTGGTAAAACAGCGGCGTTTGCGCTTCCTATACTCCAGCGTCTGGCTGAGCATCCGTTTGGTGTGTTTGCCCTCGTGGTGACGCCCACTCGCGAGCTTGCGTTTCAGCTGGCGGAGCAGTTTCGTGCCCTTGGTTCCTCGCTTCGCCTCCGTATTGCCTTGATTGTCGGTGGTATGGATATGCTTAGACAGACTAAAGAGTTGGTCGCCAGGCCACACCTTGTTATCGCCACTCCCGGAAGGATCAATGTTTTGCTCAAGGATAATCCTGAAATCGCTCCTGTTTTCTCCAGGACTAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTCCTGGATGTTGGGTTTCAGGACGAATTGAAATTTATCTTTCAGTGCTTACCAGAAAGCCGTCAAAACCTATTCTTTTCTGCAACCACAACTAGTAATTTGCAAAAGTTGCGCGAGCGTTATCAAGATAAGCTGTATGCCTTCGAGGCTTATGAAGGGTTTAAGACAGTTGAAAAGCTTACTCAACAAGCTGTATTCATCCCTAAAAAGGTGAAGGATGTATATTTGTTGCATATCTTGTCTAAAATGAAAGATATGGGAGTTCGGTCTGCCATTGTCTTTGTCTCCACTTGCAGAGATTGCCATCGTTTAAATTTAATGCTGGAAGTGCTTGATCAAGAAGCTGCAGCTCTGTATTCATTCAGATCACAGGCTCAGAGGCTTGAAGCACTTCATGAATTTAAATCAGGAAAGGTTCCTATATTACTAGCAACTGATGTTGCTGGCCGCGGTTTGGATATTCCTACAGTTGACCTTGTTATTAATTATGATGTTCCAAGGATTCCACGGGATTATATCCACCGTGTTGGTCGTACTGCAAGAGCAGGTAGAGGGGGACTTGCTTTGAGCCTTGTCACCCAGAATGATGTTGATCTCATTCGTGAAATAGAGGCCCTTATCAAAAGGCAACTTGATATGATTGAATACAAGGAAAATGAGGTGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAAAATGTTGCAAAAATGAAAATGATAGATGATGGGTTTGAAGAGAAAGCAAAAGAGAGGAAAAAACAGAAACTGAAAATGCTAGAAGAAAAAGGACTATTAAAACAAAGAGGTAAAAGAAAAAGAAATAAAGAATTTTCAAAGAAAGGAAATAAACATGAAAAAGTGGAAGTGGATGCTTCAGCAGATATAGCATCACTAAAGAAAAGGAGTAAGAAGAGACAGTAA 1542 0.4332 MEKSQHVVDENFPLFKPSLKPSINPPPATTIIPQNDVVTHENPNSITENTATFSELGLSEWAVKTCKELRMLKPRRVQQYCIPKILEGRHVIGIDETGSGKTAAFALPILQRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSSLRLRIALIVGGMDMLRQTKELVARPHLVIATPGRINVLLKDNPEIAPVFSRTKFLVLDEADRVLDVGFQDELKFIFQCLPESRQNLFFSATTTSNLQKLRERYQDKLYAFEAYEGFKTVEKLTQQAVFIPKKVKDVYLLHILSKMKDMGVRSAIVFVSTCRDCHRLNLMLEVLDQEAAALYSFRSQAQRLEALHEFKSGKVPILLATDVAGRGLDIPTVDLVINYDVPRIPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIREIEALIKRQLDMIEYKENEVLSLMKKVFSAKNVAKMKMIDDGFEEKAKERKKQKLKMLEEKGLLKQRGKRKRNKEFSKKGNKHEKVEVDASADIASLKKRSKKRQ* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1622 513 MobiDBLite consensus disorder prediction 487 506 - -
Psa2g1622 513 Gene3D - 29 254 IPR027417 -
Psa2g1622 513 MobiDBLite consensus disorder prediction 461 513 - -
Psa2g1622 513 CDD SF2_C_DEAD 267 399 - -
Psa2g1622 513 Pfam Helicase conserved C-terminal domain 283 390 IPR001650 -
Psa2g1622 513 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 82 255 IPR014001 -
Psa2g1622 513 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 201 209 IPR000629 -
Psa2g1622 513 Gene3D - 262 509 IPR027417 -
Psa2g1622 513 Pfam DEAD/DEAH box helicase 76 244 IPR011545 GO:0003676|GO:0005524
Psa2g1622 513 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 289 429 IPR001650 -
Psa2g1622 513 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 51 79 IPR014014 GO:0003724
Psa2g1622 513 PANTHER RNA HELICASE 49 480 - -
Psa2g1622 513 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 49 480 - -
Psa2g1622 513 SMART helicmild6 309 390 IPR001650 -
Psa2g1622 513 SMART ultradead3 70 270 IPR014001 -
Psa2g1622 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 410 IPR027417 -
Psa2g1622 513 CDD DEADc_DDX49 53 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1622 Psa-Chr2 128137772 128141013 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1622 35 419 Eukaryotic Initiation Factors Gene Family AT3G19760 29.716 8.27e-53 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1622 K14778 - gmx:100804060 724.546