Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1606 ATGACCTTAGAAGCTGTGGTTTTTCCACAAAAAACATTCACCTACGCTTGCAAAGATTACCTATATTCATTAGTTGAAGAATCTTGGAGCACCAACTACAGTTTTCAAACAACAGCAACAGTAGAAGAAGAAGAACAAGATCTTTATGGAATCATCGAGAAGAATTTACATCATAATATCAATCGGAATTTTGATTCTTCTTCTCCTTCCTTGGTGCAAAATGGTAAAAACCAACGGGATTCGAGTTCTTCCCCCGAAACTTCCGTTCTTCCTTCTAGTTTCGTCGTCGAAGGTGCCGCCACTGCACCAATTAGTCGCAGGCGCAAACGACGTCGCACTGCGATTGCGAAAAACGAGGAGGAAATCGAGAGCCAGAGGATGACTCATATTGCAGTCGAGCGTAATAGAAGGAAACAGATGAACGAATATCTTGCTGTGCTCAGATCCTTGATGCCTCGTTCTTATGCAAAAAGGGGTGATCAAGCATCAATTGTAGGAGGAGCAATCAACTTCTTAAAGGAGCTAGAGCACATTATCCAATCCATGAAAGGACAAAAGAAAGCAAAAGCACATGAAAATGTATTCAATAATAGCTCATCATCATCATCATTATCACCCTTTGCTGATTTCTTCATGTTCCCTCAATACTCCACATGTGCACCTCAGACCAGCACGTGCTACCCTGCTAACCCTAATCAGTCACGTGCCATGGCAGACATTGAAGTGACTCTGGTTGATAGCCATGCCAATATAAAGATACTGTTGAAGAAACAACATGGACAGGTTATGAAGATGGTTGCTGGGATTCAAAACATTGGCCTCAATATTCTCCACCTAAATGTTTCTACTCTCAATTATTTGGTTCTTGTCTCGGTTAGTGTCAAGATGATTTAA 894 0.4128 MTLEAVVFPQKTFTYACKDYLYSLVEESWSTNYSFQTTATVEEEEQDLYGIIEKNLHHNINRNFDSSSPSLVQNGKNQRDSSSSPETSVLPSSFVVEGAATAPISRRRKRRRTAIAKNEEEIESQRMTHIAVERNRRKQMNEYLAVLRSLMPRSYAKRGDQASIVGGAINFLKELEHIIQSMKGQKKAKAHENVFNNSSSSSSLSPFADFFMFPQYSTCAPQTSTCYPANPNQSRAMADIEVTLVDSHANIKILLKKQHGQVMKMVAGIQNIGLNILHLNVSTLNYLVLVSVSVKMI* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1606 297 Gene3D - 116 193 IPR036638 GO:0046983
Psa2g1606 297 Pfam Helix-loop-helix DNA-binding domain 125 176 IPR011598 GO:0046983
Psa2g1606 297 CDD bHLH_AtFAMA_like 127 196 - -
Psa2g1606 297 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 296 - -
Psa2g1606 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 194 IPR036638 GO:0046983
Psa2g1606 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 175 IPR011598 GO:0046983
Psa2g1606 297 SMART finulus 130 181 IPR011598 GO:0046983
Psa2g1606 297 PANTHER MAX DIMERIZATION, MAD 1 296 - -
Psa2g1606 297 MobiDBLite consensus disorder prediction 69 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1606 Psa-Chr2 126420933 126422824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1606 1 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G22490 45.833 7.66e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa2g1606 HLH 6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1606 - - gmx:100805420 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1606 2 126420933 126422824 Psa5g1172 5 91432905 91434770 PCT