Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1578 ATGCGCATCTACACCAAACTCCCTGCACCTCCACCACCTCTCACTCTTTTACTTCTTTTCCTCTCTTTCTCCTCTCCGGCAACGTCTCAACCAGAGACTCCATCTCCGCCGCCGCAAGATCCATTCGCGAGAATGAAATTCGACAGAACCATGGCCTCTGTGCTTATCTTCCTCGTCATGGTTTTCTTCACTCTAGGTTTCATTTCCATCTACACTCGTCAATGTAGAGAGCAGAGAATCAGAGGAAGGATCGATCTCGCTGTTCCGATCAGCGGCGGCGACGCTTACAGACGGCCGTACGGACTCGATCCGGTGATTCTCGAGAATTTTCCGAACTTTGTTTATTCCGAGGTGAAGGATCTCAAGATTGGGAGAGTCACGCTAGAATGCGCTGTCTGCTTAAACGAGTTCGAAGATGATGAAACGCTGCGTTTGATTCCGGTATGTAGCCACGTGTTCCATCGTGAGTGTATTGATGCGTGGTTGTTGCATCACTCCACGTGTCCGGTTTGTCGAGCCGATCTTGTTCCCGATCCGAAAGACGAGTTGGCGTCTTCTTCAATCCTGATACAGATCTCGGATGCGAATTTGGATGAACCGGGTTTGAACCACGAACCGGATGTGGTTGAACCGGTTGATGTGGATGATGACAACGATATTCAGAAGACAAAAATAGTAAAAGTGACTCCAGACGGAAATTTAGATGGAACGAAAATGAAAATGAAAATTCCGGTTCGGTCCAAGTCAATGGGTTTTATGTTTGCGAGATTGTTTTCGCGGTCTAACTCGATGGGTCACTTGACGGTTCGTTCGAGTGAGGATTTGGAGCGGTTCACGTTAAGGTTGCCGGATGAGGTTCATAATAGGCTTGTGAATGACATGACATTGAACCGGACAAAAAGTTTTGGTGTGGAAATGGCATTACAGAGTGAGAGAAGGGGTTTTAGAACGAGGAGTGTAGGGAGGAATTTTCTACAGTACGAACGGTTCAATGTGGAGAGCCGGGTGGACCGGAAAGGGTTCGGTTGTGGTCCGTCTTTATTGGGCCGGGTTGGTTCAATGAGGTTAACTAAGGATGGGAATAAGGGAACAATGGGTGTTGTGGATGAAGTTGATGTTGAAGAACGTTCTTCGAGTCATTTAGTTAATACTAATTGA 1158 0.4715 MRIYTKLPAPPPPLTLLLLFLSFSSPATSQPETPSPPPQDPFARMKFDRTMASVLIFLVMVFFTLGFISIYTRQCREQRIRGRIDLAVPISGGDAYRRPYGLDPVILENFPNFVYSEVKDLKIGRVTLECAVCLNEFEDDETLRLIPVCSHVFHRECIDAWLLHHSTCPVCRADLVPDPKDELASSSILIQISDANLDEPGLNHEPDVVEPVDVDDDNDIQKTKIVKVTPDGNLDGTKMKMKIPVRSKSMGFMFARLFSRSNSMGHLTVRSSEDLERFTLRLPDEVHNRLVNDMTLNRTKSFGVEMALQSERRGFRTRSVGRNFLQYERFNVESRVDRKGFGCGPSLLGRVGSMRLTKDGNKGTMGVVDEVDVEERSSSHLVNTN* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1578 385 Pfam Ring finger domain 129 172 IPR001841 -
Psa2g1578 385 PANTHER RING FINGER DOMAIN-CONTAINING 17 310 - -
Psa2g1578 385 SUPERFAMILY RING/U-box 114 178 - -
Psa2g1578 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 177 IPR013083 -
Psa2g1578 385 CDD RING-H2_PA-TM-RING 129 172 - -
Psa2g1578 385 SMART ring_2 130 171 IPR001841 -
Psa2g1578 385 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Psa2g1578 385 PANTHER RING-H2 FINGER PROTEIN ATL11 17 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1578 Psa-Chr2 123886475 123888357 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1578 16 361 Rapid Response to Elicitors AT3G05200 37.853 3.55e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1578 K10664 - gmx:100815982 341.273