Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1552 ATGGAGTTTGATGAACATGAAGAGGAACATGAAGAGGAGATGGAGATTCCGGAAACACCGATGCCGGTGCCGGCGAGTTACGACTCACTCGGAAACTCAGCTTCACGGTCGAAAATCTCCGGTGGAGTTGACGGACGGAAAGGTAGCGGTAACGGTAACGGTAACAGTAACAGTGGCGGTTTTTCCTCAACGGTGAGGTATAGAGAATGTCAGAAGAATCACGCTGTCAGCTTCGGTGGCCACGCCGTCGACGGTTGCTGCGAGTTCATTTCCGCCGGTGAAGAAGGAACGCTTGAAGCTGTGATTTGCGCTGCTTGTAACTGTCACCGGAACTTCCACCGTAAAGAGATCGACGGAGAAACAGTTAGTTCGTGTCAGCGGCAGCAACCTCCACCACCGCCGCAACCATACCACCATCATCATAACCAATTTCCACCTTACTATCACCGAGGTCCTCCTTCTACCTCCGGTTACCTTCACCACCACCTAGCAACTCCGGTGGCGCATCACAGACCTTTGGCTCTCCCGGCTTCTGCTTCTGGCGGCGGATTCAGCAGAGAAGAAGATGATATTTCAAACCCTAGCAGCAGCGGCGGTGGAGGTAACGGTTCCGGTGGATCAAAGAAAAGATTCAGAACGAAATTCACGCAGGAACAGAAAGAGAAGCTCTTAGCTTTCGCTGAAGAACACGGTTGGAGAATTCAGAAACAAGATGAAGCTGCTATAGAACAGTTTTGTGCTGAGAATTGTGTCAAGAGAAATGTTCTTAAAGTTTGGATGCACAATAACAAGAACACTCTTGGTAAGAAACCCTAA 816 0.4975 MEFDEHEEEHEEEMEIPETPMPVPASYDSLGNSASRSKISGGVDGRKGSGNGNGNSNSGGFSSTVRYRECQKNHAVSFGGHAVDGCCEFISAGEEGTLEAVICAACNCHRNFHRKEIDGETVSSCQRQQPPPPPQPYHHHHNQFPPYYHRGPPSTSGYLHHHLATPVAHHRPLALPASASGGGFSREEDDISNPSSSGGGGNGSGGSKKRFRTKFTQEQKEKLLAFAEEHGWRIQKQDEAAIEQFCAENCVKRNVLKVWMHNNKNTLGKKP* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1552 271 SUPERFAMILY Homeodomain-like 195 269 IPR009057 -
Psa2g1552 271 MobiDBLite consensus disorder prediction 1 15 - -
Psa2g1552 271 MobiDBLite consensus disorder prediction 181 209 - -
Psa2g1552 271 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 116 IPR006456 -
Psa2g1552 271 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 53 270 - -
Psa2g1552 271 Gene3D - 193 268 - -
Psa2g1552 271 Pfam ZF-HD protein dimerisation region 65 117 IPR006456 -
Psa2g1552 271 MobiDBLite consensus disorder prediction 40 59 - -
Psa2g1552 271 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 53 270 - -
Psa2g1552 271 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 208 265 IPR006455 -
Psa2g1552 271 MobiDBLite consensus disorder prediction 189 203 - -
Psa2g1552 271 MobiDBLite consensus disorder prediction 1 34 - -
Psa2g1552 271 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 66 117 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1552 Psa-Chr2 120831605 120834055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1552 63 267 ZF-HD Transcription Factor Family AT4G24660 53.365 4.54e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Psa2g1552 ZF-HD_dimer 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1552 - - gmx:100776421 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1552 2 120831605 120834055 Psa5g1073 5 83659706 83662069 PCT