Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1546 ATGGCACCTAGTTTTGATTTTGCAAGTCTTCTCTGTACTGAAGACATAAGTTTTTTTGATGAAAATGATTTTGGGGGTTCAATGGAGGTTTTAGAGGAACCATGTCAAGTTGAATATGATCCTCCAAACCTTGATGAAACTCAGCAATTCGATGAATCAATTGGGTCGGTTCCACCATTGCTAAGTGATGAGAGTTTGGAGGCTTTGGTTGAAAAAGAATACCTTCACATGCCTGCTAGTGATTATGTCAGTAGGTTAAAAATTGGGGATTTGGATTTGGAGGGTAGAATGGAAGCCATTGAATGGATTCAAAAGGTTGGAATGCATTTTGGTTTTGGGCCTCTATGTGTGTATCTAGCTGTGAACTTCATGGATCGCTTCCTTTCTGCGGTTGATATGCTAAAGGATAAAATATGGTCGATTCAACTCTTGGCTGTGGCTTCCTTGTATCTTGCAGCCAAAATTGATGAGACCGCAGTTCCTCGGTCTCTTGATATGAAGATGAATGAAGAGAAGTATTTATTTGATAACAAAACAATACTTAAGATGGAGCTAATGATACTGACCACATTGAATTGGAGAATGCAATCAATCACACCTTTCTCCTTCATTGACTACTTCCTCAACAAGCTCAGCAATGATCCAGTTCCAACAGAAGATTCATTTTCGCAATCTTTCCAACTCATTATGAGGACTATAAGAGGACTCGACTTCATTCAATTCAAGCCATCAGAAATTGCAGCAGCTGTTGCAGTAACATTATCCGCAGAAGGAGAAAACCAAACCATTGGAACTGATAAATCAGTTTCCCTTCTGACTCAATATGTAGAAAAGGAGAAAGTAATGAAGTGTATTGAAATGTTTCAACAGCTGACATCATCAGGAAGTGCTTCTGAAGAAGATAGTATTACTACTACAAATGCTCATGAGTCTGTTGGATTCTCTATAGGAGAGTTGGATTCTCTATGCCTCAGCAACATAAATGCTACTACTTCATCATCACTTGCAAATTCTTCAAGTAATACTAATAGCCCTGAAGCCAAACGCATCAAACATAACAAAACCTATGAAGAAGCATAA 1080 0.3843 MAPSFDFASLLCTEDISFFDENDFGGSMEVLEEPCQVEYDPPNLDETQQFDESIGSVPPLLSDESLEALVEKEYLHMPASDYVSRLKIGDLDLEGRMEAIEWIQKVGMHFGFGPLCVYLAVNFMDRFLSAVDMLKDKIWSIQLLAVASLYLAAKIDETAVPRSLDMKMNEEKYLFDNKTILKMELMILTTLNWRMQSITPFSFIDYFLNKLSNDPVPTEDSFSQSFQLIMRTIRGLDFIQFKPSEIAAAVAVTLSAEGENQTIGTDKSVSLLTQYVEKEKVMKCIEMFQQLTSSGSASEEDSITTTNAHESVGFSIGELDSLCLSNINATTSSSLANSSSNTNSPEAKRIKHNKTYEEA* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1546 359 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
Psa2g1546 359 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 352 - -
Psa2g1546 359 SUPERFAMILY Cyclin-like 179 291 IPR036915 -
Psa2g1546 359 Pfam Cyclin, N-terminal domain 67 195 IPR006671 -
Psa2g1546 359 Gene3D - 66 286 - -
Psa2g1546 359 MobiDBLite consensus disorder prediction 333 359 - -
Psa2g1546 359 SUPERFAMILY Cyclin-like 60 195 IPR036915 -
Psa2g1546 359 CDD CYCLIN 95 188 IPR013763 -
Psa2g1546 359 SMART Cyclin_C_2 198 319 IPR004367 -
Psa2g1546 359 Gene3D - 79 196 - -
Psa2g1546 359 SMART cyclin_7 101 189 IPR013763 -
Psa2g1546 359 PANTHER CYCLINS 1 352 IPR039361 -
Psa2g1546 359 Pfam Cyclin, C-terminal domain 198 305 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1546 Psa-Chr2 119366420 119368841 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1546 55 325 Core Cell Cycle Gene Families AT2G22490 40.426 1.32e-64 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1546 K18810 - gmx:100803873 352.058