Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1530 ATGCGGAGATTCTACGGGTTTGAGAGCTGGATAGATAAAGACTCAGATAAAATCAACGGCGAGAAAACAAAGCCAGAGAGAAAATCAACAGAAGCATGCAAGAGTCACAGGGAAGCTGAAAGAAGACGCAGACAGAGAATCAACGACCATCTCTCCACCCTTCGTTCTCTCCTCCCTAACACCGTCAAGTCGGATAAGGCGTCGTTGCTAGCGGAAGTCGTGCAGCATGTGAAACGGTTACGGAAGGAAGCTGATGACGTGGCGAACCGTTGGAATGATGAACCGTCTTCTTCATGTAGTGGAGAACCGGGTTCGGTTGTTTCTGGTGAGGAAGCTGAGTTGTGGCCGTTTCCGGGAGAATCGGACGAGGCGACGGTGGGTTGCTGCAACGGCGAGGGAGGGGAAGCTCGGAGGATGAAAGCGACGGTGTGCTGTGAGGACCGGCCTGGACTGAACCGGGATCTGGCACAAGTGATCCGGTCGGTCCGGGCGAAACCGGTTCGGGCGGAGATAATGACGGTTGGGGGGAGGAGTAAGAGTGTTGTGGTGGTGGAGTGGGGTGATGATGGAAGAGAGGGGAAGGAAGTTGAAGCGTTGGAAAGGGGTTTGAAGGCGGTGATGGAGAATCGGACTTTTGTGGATTCTGGAATGGGCCCGTTGTTGTTGGGCCGTAAACGGGCCCGTGATAGTAGTAAGGTTGATTGTTCTTTGTTATTGAGAAATGAGAATTTCTGCTGA 738 0.5285 MRRFYGFESWIDKDSDKINGEKTKPERKSTEACKSHREAERRRRQRINDHLSTLRSLLPNTVKSDKASLLAEVVQHVKRLRKEADDVANRWNDEPSSSCSGEPGSVVSGEEAELWPFPGESDEATVGCCNGEGGEARRMKATVCCEDRPGLNRDLAQVIRSVRAKPVRAEIMTVGGRSKSVVVVEWGDDGREGKEVEALERGLKAVMENRTFVDSGMGPLLLGRKRARDSSKVDCSLLLRNENFC* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1530 245 PANTHER TRANSCRIPTION FACTOR BHLH30 16 231 IPR045847 GO:0003700|GO:0006355
Psa2g1530 245 SUPERFAMILY ACT-like 142 208 IPR045865 -
Psa2g1530 245 Pfam Helix-loop-helix DNA-binding domain 33 80 IPR011598 GO:0046983
Psa2g1530 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 31 80 IPR011598 GO:0046983
Psa2g1530 245 Coils Coil 70 90 - -
Psa2g1530 245 SMART finulus 37 86 IPR011598 GO:0046983
Psa2g1530 245 Gene3D - 25 89 IPR036638 GO:0046983
Psa2g1530 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 34 89 IPR036638 GO:0046983
Psa2g1530 245 MobiDBLite consensus disorder prediction 15 47 - -
Psa2g1530 245 PANTHER OS09G0463900 PROTEIN 16 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1530 Psa-Chr2 117779536 117780904 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1530 28 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 45.455 3.99e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa2g1530 HLH 6.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1530 - - gmx:100816394 290.812