Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1501 ATGGGTGGTGCACCTTCTATCAACGCATTCACCGTCCCATTTTTTCCCTTCTTCCCCATCATCATCATCGTCGTCACCACCACACTCATTCTAATCGCCAGCGCAGAAGATCAAGATACAAAAGAAAATACAAATATTCCCAGTCTTGAAGACCATAATGGCACCGCGGCCGATATGTCATTACAATCACCATTATCATCAGCCGACCCTGATCAAGTGGTGACAAAATCAGTTACATTCAGACCTAGCGCGGCCGCGATTGTAGGTGTTTTAGCAACCACATTTTCCCTCACGTTTCTACTCCTTCTCTACATCAAACACTGCAATGGCCTTGCTAGCAACGCAAATCTAGATGGAGATATGGATTTGCAAGAGAGGAAGAACTCTGGGATTGGACGGACTGTTGTTGATTTGTTGCCGGCATTCAAGTTTGGTTCGTTGAGAGGACAAAAACATGGACTCGAATGTGCGGTTTGTCTCACAGGGTTTGAGGATCATGAGATACTGAGATTATTGCCCAAATGCAAACATGCTTTCCATATGGAATGCGTGGACACATGGCTTGACGAACACTCCACGTGCCCGCTCTGTCGCTATAAAGTCAACCCTAACGACATACTTGTTTCTCATGAACTGTTGTCGTCAGACGTCGGAAGCGGGAGAGTTACGAGTAATATCATCAACAACAATGAGTGGTCGCAACGTGAAAATGAAAGTATAGGTTCACGACGAGTTTCTTTTGTGACAGAGAGGAAGAGTGAAGGGTCTTTGCGTCATCATCATTCGAGAAAGGTAAAGAGTGAAAGTGTTATAGGAGAACATAGGTTAGATCACCAGATAGTTATTTCTCCTACTTGTTCTTACACTTCAGATAGTGGTGTTCACCAACGGTGGAGCAATTTTGAAACAGATGATATGCTTTACTTAACTTCTGATAGGATTATTAGTTGCAGTTCGTCATCGCATGAAGGAAGCAGAAGAGCGGTGAAGCGTAATCGTAATCGCGGTGTTGTTGATGATGAGATGGAGAATGGTTTTGGTGGTAGTGGTGTTGGTGGGAGGAGGAATGAGAGGGATTTGAGGAGTACTGTCTCGGAGATGACAGGGATGATGAGGGTTTTGAATAGGGATAGAAGGAGGGAAAGAGAACGGCGTAGTGGTGGTGGTGGTGGTGGTCGGGAAGAACAAGAACAACAACAGGAGAGAGTGGCTTCGAGGTGGTGGTCTTGGATTTCTAGGTCACAACAATCATCTAGATCAAGATCAAGATCAAGTTCAAGTTCTGAATGA 1290 0.4481 MGGAPSINAFTVPFFPFFPIIIIVVTTTLILIASAEDQDTKENTNIPSLEDHNGTAADMSLQSPLSSADPDQVVTKSVTFRPSAAAIVGVLATTFSLTFLLLLYIKHCNGLASNANLDGDMDLQERKNSGIGRTVVDLLPAFKFGSLRGQKHGLECAVCLTGFEDHEILRLLPKCKHAFHMECVDTWLDEHSTCPLCRYKVNPNDILVSHELLSSDVGSGRVTSNIINNNEWSQRENESIGSRRVSFVTERKSEGSLRHHHSRKVKSESVIGEHRLDHQIVISPTCSYTSDSGVHQRWSNFETDDMLYLTSDRIISCSSSSHEGSRRAVKRNRNRGVVDDEMENGFGGSGVGGRRNERDLRSTVSEMTGMMRVLNRDRRRERERRSGGGGGGREEQEQQQERVASRWWSWISRSQQSSRSRSRSSSSSE* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1501 429 CDD RING-H2_EL5_like 155 198 - -
Psa2g1501 429 MobiDBLite consensus disorder prediction 343 429 - -
Psa2g1501 429 PANTHER RING-H2 FINGER PROTEIN ATL43 57 259 - -
Psa2g1501 429 PANTHER RING-H2 FINGER PROTEIN ATL43 273 418 - -
Psa2g1501 429 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
Psa2g1501 429 MobiDBLite consensus disorder prediction 402 429 - -
Psa2g1501 429 SUPERFAMILY RING/U-box 152 204 - -
Psa2g1501 429 MobiDBLite consensus disorder prediction 372 401 - -
Psa2g1501 429 Pfam Ring finger domain 155 198 IPR001841 -
Psa2g1501 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 205 IPR013083 -
Psa2g1501 429 SMART ring_2 156 197 IPR001841 -
Psa2g1501 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 273 418 - -
Psa2g1501 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 57 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1501 Psa-Chr2 114558972 114560848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1501 59 413 C3H Transcription Factor Family AT2G20030 34.615 2.00e-53 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1501 K19041 - mtr:MTR_5g066250 345.125