Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1492 ATGTCCTCACAAGCAGTGCAGTTGTATATAGAGAAAAATGATGTGGTTATGGACAATGGTTTAGTAAAAGTGTATTTCTCAAATCCTGGTGGATTTGTGACTAGAATACAATATAATGGCATTGATAATTTGCTTGAAGATCTTAACCAAATGAAGAATAGAGGATATTGGGATGTTGTTTGGAGTGAAGCTGGAACTACAGGAACACTTGGGACATTTGAGAGGGTTGTGGGAACAAGTTATAATGTTATAATGAAAACAGATGAACAAGTTGAAATCTCATTTACTAGAATATGGGATCCATCTCTAAAGGGAAAGCAATCACCTCTAAATATAGACAAAAGGTATGTGATGCTACGTAATTCATCAGGATTCTACTCTTATGCTATTTTTGAACACTTGAAAGAGTGGCCAGCTTTCAACATACCTCAAATAAGAATTGTTTATAAACTTCGTAAAGACAAGTTTCATTACATGGCTTTGGGGGATGATAGACAAAGGTTTATGCCTCTACCTGATGATCGATTACCTGGAAGAGGAGAAGAACTTGTTCCTCCAGAAGCTGTTTTGCTTGTTAATCCTGTGGAACAAGAGTTCAAAGGAGAGGTTGATGACAAGTACCAATACTCAAGTGAAAATATAGACCTTAAGGTCCATGGATGGACAAGTTCAAAATCTGAAACAAACCAAGCAATAGGGTTTTGGGTAATCATACCCAGCAATGAGTTCCGATCAGGTGGCCTTGTCAAACAAAATCTCACCTCTCATGTTGGCCCTATCACTCTTGCAATGTTTCTTAGTGCTCATTATGCAGGAGAGGACATAGTTCTTAAACTCCAACCCAATGAGCCATGGAAAAAAGTTTTTGGGCCAACTTTTGTCTATCTTAATACCATTTTAGATCATCATAAGGATTCACTAGAGCTATGGAAAGATGCCAAATATCAGATGAACAAGGAAGTTCAAAGTTGGCCCTATGATTTTCCAGCTTCGATTGATTTTCAAAAGTCTGGCGAACGAGGAAGTGTTAATGGCACGTTACTAGTTCGTGATAGGTTTGTAAGTGATAAAGACATAAAAGCACAAGGTGCGTACATAGGTTTGGCACCACCCGGAGATGTTGGATCTTGGCAAAGAGAATGCAAGGGATATCAATTTTGGTGTAGAGCAAACGAGGACGGATACTTTTCGATAGAAAATATACGAAGTGGGAATTACAATCTATATGCATGGGTTCCAGGTTTCATCGGAGAATATTCGAACAATATTGTCATCAACATAATCCCAGGTTGTAAAATAAACTTTGGTGACATTATTTACGAGCCTCCAAGAAATGGTCCAACATTATGGGAGATCGGAATCCCCGATCGCTCTGCTGCCGAGTTCTACGTTCCAGACCCTAATCCAAAGTTCATAAACAAGCTCTTTATAAATCATCCAGACAAGTATAGGCAGTATGGCTTGTGGGAAAGATATGCAGAGTTATATCCAAATGAAGATTTAGTTTATACTGTTGGTGTTAGTGACTACACAAAAGATTGGTTCTATGCACAGGTTACAAGAAAGAAAAATGAAGATATTTATGAAGGAACTACATGGCAAATAAAGTTTAACCTAGATGACGTGGGAAAAAATGAAATATATAAATTGCGATTGGCTCTTGCAAGTGCAAATGTCTCTGAATTACAGGTTCGAGTGAACAGTGTTAAACAAGATCCTCCAATATTTAGTACTGGAGTTATTGGAAAAGATTATGCAATAGGTAGACATGGCATTCATGGACTGTATTGGCTATTCAACATTGATGTACCAAGTATTTTGCTATTCAATGGAGATAATACTATTTTTCTAACACAAACTATGGCTTTTGGTCCTTTGGCACGCTTTCAGGGAATAATGTATGACTATATTCGTTTAGAAGGTCCTGAATCTTGTTATTCATATTAA 1947 0.3739 MSSQAVQLYIEKNDVVMDNGLVKVYFSNPGGFVTRIQYNGIDNLLEDLNQMKNRGYWDVVWSEAGTTGTLGTFERVVGTSYNVIMKTDEQVEISFTRIWDPSLKGKQSPLNIDKRYVMLRNSSGFYSYAIFEHLKEWPAFNIPQIRIVYKLRKDKFHYMALGDDRQRFMPLPDDRLPGRGEELVPPEAVLLVNPVEQEFKGEVDDKYQYSSENIDLKVHGWTSSKSETNQAIGFWVIIPSNEFRSGGLVKQNLTSHVGPITLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTILDHHKDSLELWKDAKYQMNKEVQSWPYDFPASIDFQKSGERGSVNGTLLVRDRFVSDKDIKAQGAYIGLAPPGDVGSWQRECKGYQFWCRANEDGYFSIENIRSGNYNLYAWVPGFIGEYSNNIVINIIPGCKINFGDIIYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKFINKLFINHPDKYRQYGLWERYAELYPNEDLVYTVGVSDYTKDWFYAQVTRKKNEDIYEGTTWQIKFNLDDVGKNEIYKLRLALASANVSELQVRVNSVKQDPPIFSTGVIGKDYAIGRHGIHGLYWLFNIDVPSILLFNGDNTIFLTQTMAFGPLARFQGIMYDYIRLEGPESCYSY* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1492 648 Pfam Polysaccharide lyase family 4, domain II 362 433 IPR029413 -
Psa2g1492 648 PANTHER LG27/30-LIKE GENE 1 644 - -
Psa2g1492 648 CDD RGL4_M 339 438 IPR029413 -
Psa2g1492 648 SUPERFAMILY Galactose-binding domain-like 445 640 IPR008979 -
Psa2g1492 648 CDD RGL4_N 11 298 - -
Psa2g1492 648 Pfam Rhamnogalacturonate lyase family 7 203 IPR010325 -
Psa2g1492 648 Gene3D - 336 426 - -
Psa2g1492 648 CDD RGL4_C 450 640 - -
Psa2g1492 648 Pfam Polysaccharide lyase family 4, domain III 448 639 IPR029411 -
Psa2g1492 648 SUPERFAMILY Starch-binding domain-like 382 425 IPR013784 GO:0030246
Psa2g1492 648 Gene3D - 446 640 - -
Psa2g1492 648 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 644 - -
Psa2g1492 648 Gene3D - 5 279 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1492 Psa-Chr2 113769960 113774009 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1492 1 642 Polysaccharide Lyase AT1G09890 62.617 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1492 K18195 - gmx:100815677 1105.51