Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1490 ATGGGTGCTGTCGTCGAGTATTTACCGCCGCCGCACGAGGAGGAGATGGCGGTACTGTCTCTTAACAAACTGCCGTTGGGTTTCCGGTTCCGTCCTACCGACGAGGAGCTCGTTGATTACTACCTTAGGCTTAAGATCAACGGGAACGGTGATGAAGTTTGGGTTATCCGTGAGATTGATGTTTGTAAATGGGAGCCTTGGGATTTGCCTGATTTATCTGTAGTGAGGAACAAGGATCTGGAGTGGTTCTTCTTCTGTCCGCAGGATCGTAAGTATCCAAATGGGAATAGGTTGAACCGAGCGACGGAGCATGGTTATTGGAAGGCAACGGGTAAGGATAGGATGATTAAGTCTGGACCGACGTTGATTGGAATGAAGAAGACTCTTGTTTTCTATGCCGGTCGTGCTCCCAAGGGGCAGAGGACCCATTGGGTTATGCATGAGTATAGGCCTATCTTGAAGGAGCTTGATGGTACTAACCCTGGACAGAACCCATACGTCCTCTGTCGCTTGTTTAAGAAGCAGGATGAGAGTCTCAATAATTCAAACTGTGGTGAAGTCGAGCAGACTGCCTCAACTCCCATGACTGCCAATTACTCTCCAGAAGAAATACAGTCTGATCCAAATCTGGTTCCTGTAACTTCCTCACAGGCTACAGAGGATGATAAGCACCTACCAGATATCCCTGAGAACTCTGAGGAAGCAATATCCAATGTTATAACGCCATCTGATTGCTATAGCGATGCATGTAATGCTGCTGATGCACAGTATCAAATTGTAGAAGTACCGGCTGCAGAGGAGGACCCACTGTTGAACTTTGGCATATTTGATGAGCCACTATTGGAGCCATTGGATGATAAATTATTCTCCCCAGTCCATGCACATTTTCCACCAGACTTTTACCATCAAGCCAACAATGAATTATTTCAATATGGTACAAATAAGACTGATGTTTCAGACTTTTTCAACTCAGCTGTTAATTGGGACGATCTATGTGATTCAATCTATCTTGAAGATGAGAACAATGGACCATGCAGTGTGTCAGATGTGGAAATGGCCAATATGACGCATCTGCAAGCATCACATGCTTATCCCGAGGGGGCTATTCTGCAAAATAGCGATGTAGGATCGTTTCAGAACAATTCACAGATGACATTTTCAACCGATTTTAGTATGGGCCAAATACCCTCTGTGACCAATAGCTATAACCAATCAGGGAATTTGGACGCCGTTGTCCATGGAGACAACACTGGAATCCGGATAAGGACTCGACAAGGACAAAATGAACAGCCAAACATGAACCCAGTGATGCAAGCACAAGGTAGTGCACCAAGGAGAATACGTTTGGGAGGATTTGTGACACATTCCCTTGATTCCGAGGAGACAACAAAAGGTGAGAGCTGTGCACCCGAAAACCATAACTCAAAAACCATCATTGCCAGCGAATCATCTATTTCGCAGGAGAGAGAAGCATCAGAAAACCTTGCTACTGTTGCGAGTATTTCCGACACTAACGATGTAGATGAACCAGAGAAGACGTCTCCGACAGCTGACACATCAAAGCCATCCTCGAATCGTTCAACGTGGTTTTCTGTTCTTGCAGTATCTGCAGGTGTACTGGTCTCATCAGTATTGCTTTTGAATATTTGGGGATATCTTAGATTTGAAACTGCTTATTAG 1680 0.4506 MGAVVEYLPPPHEEEMAVLSLNKLPLGFRFRPTDEELVDYYLRLKINGNGDEVWVIREIDVCKWEPWDLPDLSVVRNKDLEWFFFCPQDRKYPNGNRLNRATEHGYWKATGKDRMIKSGPTLIGMKKTLVFYAGRAPKGQRTHWVMHEYRPILKELDGTNPGQNPYVLCRLFKKQDESLNNSNCGEVEQTASTPMTANYSPEEIQSDPNLVPVTSSQATEDDKHLPDIPENSEEAISNVITPSDCYSDACNAADAQYQIVEVPAAEEDPLLNFGIFDEPLLEPLDDKLFSPVHAHFPPDFYHQANNELFQYGTNKTDVSDFFNSAVNWDDLCDSIYLEDENNGPCSVSDVEMANMTHLQASHAYPEGAILQNSDVGSFQNNSQMTFSTDFSMGQIPSVTNSYNQSGNLDAVVHGDNTGIRIRTRQGQNEQPNMNPVMQAQGSAPRRIRLGGFVTHSLDSEETTKGESCAPENHNSKTIIASESSISQEREASENLATVASISDTNDVDEPEKTSPTADTSKPSSNRSTWFSVLAVSAGVLVSSVLLLNIWGYLRFETAY* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1490 559 Pfam No apical meristem (NAM) protein 25 150 IPR003441 GO:0003677|GO:0006355
Psa2g1490 559 Gene3D NAC domain 33 179 IPR036093 GO:0003677|GO:0006355
Psa2g1490 559 MobiDBLite consensus disorder prediction 456 477 - -
Psa2g1490 559 ProSiteProfiles NAC domain profile. 24 174 IPR003441 GO:0003677|GO:0006355
Psa2g1490 559 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 17 434 - -
Psa2g1490 559 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 17 434 - -
Psa2g1490 559 MobiDBLite consensus disorder prediction 497 523 - -
Psa2g1490 559 SUPERFAMILY NAC domain 16 174 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1490 Psa-Chr2 113606730 113610653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1490 16 471 NAC Transcription Factor Family AT4G35580 43.802 1.44e-102 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa2g1490 NAM 4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1490 - - mtr:MTR_5g069030 734.947