Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1478 ATGGCTTTTCCTTCCATGCTAATTATCATCCCTAATCTGATTTTTGTTCTATCTCAAATTTCATTTGCAACAGATACTATCACCCAGTCAACTTCATTTCTTGATGGCAGCACTTTGATTTCAAAAGATGGAACTTTTGAATTGGGATTTTTTGGTAATTTCTCAGCCCGTTATATAGGTATTTGGTATAAAAATATTCCGGTTCGAAGAGTTGTTTGGGTTGCAAATCGCGATAATCCAACCAAAGATGATTCGAGCAAGTTGATCATCAACCAACATGGAAATCTTGTGCTTCTCAACCACAATAACTCTCTTGTATGGTCAGTAAATGCAACAAGAAAGACTTCAAGTCCCGTTGTCCTTCAGCTTTTAGACAACGGGAATTTAGTACTCAGATATGAGAATTCAAGTTTAGAGTTGAATTTGGGAGAAGAAGAAAAAATTTTGTGGCAGAGTTTTGATTATCCGTGTGATACAATATTATCAGGAATGAAGTTTGGATTGAACAAAAAAAACGGATTTGAAAAACGTCTCGCAGCTTGGAGAACTGCAAATGATCCATCTTCAGGTGATTTAACTATAACCATGATGCATACGAGCAACCCCGAAGCAGTAATTTGGAAAGGATCCACAAAATATTATAGGTCGGGACCATGGAATGCTCAAACTAGTGGAGTTGTTGGATTAAAGCCTAATCCAGTTTATAATTTCGAGTTCGTCAACAATGAAGACGAGGCGTATTATATGTACACACTCAAAAACAAATTTGTGATCTCTATAATGGTTATCAACCAAACCATTTCATCTCGCCAACGTCTCATTTGGGTTCCTGAGTTGAAAAGATGGAGTGTTTACCAATCATTGCCTCTTGATGCTTGTGATGCTTACAATGTTTGTGGTGTGAATGGACATTGTACCATTGACGGGTCGCCAATGTGTCAATGCTTAGACAAATTTGAGCCGAAATCGTATCAACAATGGAATGCAATGGATTGGTCACAAGGATGCGTGCGTAGTGGAAATTGGAGTTGTGGAGTTAAAAATCGAGACGGGTTTCATAAATTTGTCGGGATGAAGTTTCCGGATACTACGAATTCTTGGATCGATCTAAACATGACACTTGAGAATTGCAAAATGAAATGCTTGCAAAACTGTTCTTGCACTGCTTATACATGCTTAGATCCAACTGGAGTAGTTAGTGGTTGTTCTCTTTGGTTTGATGATCTTATTGATTTGAGACTTTCACAAAGTAGCGGACAAGATTTATATGTCCGTATAGATGCTAGTTCAGATATCGATGCTAAACATGGACAGGGAAAAAATGTGATTTTAAAGGTTTCAATCACACTTTCAATGACCCTTTTGACCCTATTTACTATATCTTACATTTATATAACCAAAGCAAAACATAAAGGGAAAAATCTCCAAGGGGGACATGAAAATTTTGAGCTTCCTCAATTTGATATATCCTCAATACTCAAGGCTACCAATAACTTCTCATTCGACAATAAACTTGGTGAAGGTGGTTTTGGGCCCGTATATAAGGGTACAATGATAGATGGACAAATAATTGCTGTGAAAAGGCTTTCAGAAAATTCTGAACAAGGATTGATAGAATTTAAAAATGAATTTATATTGTGTACTAAATTACAACATCGAAATCTTGTGAGGGTTCTTGGTTGTTGCATTGAAGGAGAGGAAAAAATATTACTATATGAATACATGCCTAAAAGAAGTCTTGATTTATTTATTTTTGATCCAGTTCAAAGTAAACTGCTAGATTGGTCTATGCGTTTCAATATCTTGCATGGAGTTGCACGAGGACTTCAATATCTTCATCAAGATTCTAGGTTAAGGATCATACATAGAGATCTAAAAGCGAGTAACATTTTATTAGACAATGAAATGAACCCAAAAATTTCAGATTTTGGCCTAGCTAAAATGTTCGGAGGTGATCAAATTGAAGGAAAGACAAGAAGAATAGTTGGAACACATGGTTATATGGCACCTGAGTATGTCATTCATGGATTATTCTCCATAAAATCCGATGTATTCAGCTTTGGTGTATTATTATTAGAAGTAATAAGTGGAAAGAAAAATAGGTCACTTACCTATCATGAACATGAACATGATCACAATCTTCTTTGGCATGCATCGAGATTGTGGAGAGGGGGAGTCCCACATGAATTGATTGATATTGGTTTAAAAGACACATGTGTTCAACATGAAGCCTTACGATGCATTCAAATAGGTCTTCTATGTGTGCAACATGTTCCCGATTATAGACCAAACATCTCACATGTAATTATGATGTTAGGTAGTGAAAGTACTCTACCTCAACCAAAGGAGCCTGGTTTCTTAATTGAAATGATAACGACTAAAGAGCAGTCTTTTTCGAAAAGACAAACATCTTCCATGAATGAAGTAACTCTCTCAATATTAAGTTCTAGATAG 2454 0.361 MAFPSMLIIIPNLIFVLSQISFATDTITQSTSFLDGSTLISKDGTFELGFFGNFSARYIGIWYKNIPVRRVVWVANRDNPTKDDSSKLIINQHGNLVLLNHNNSLVWSVNATRKTSSPVVLQLLDNGNLVLRYENSSLELNLGEEEKILWQSFDYPCDTILSGMKFGLNKKNGFEKRLAAWRTANDPSSGDLTITMMHTSNPEAVIWKGSTKYYRSGPWNAQTSGVVGLKPNPVYNFEFVNNEDEAYYMYTLKNKFVISIMVINQTISSRQRLIWVPELKRWSVYQSLPLDACDAYNVCGVNGHCTIDGSPMCQCLDKFEPKSYQQWNAMDWSQGCVRSGNWSCGVKNRDGFHKFVGMKFPDTTNSWIDLNMTLENCKMKCLQNCSCTAYTCLDPTGVVSGCSLWFDDLIDLRLSQSSGQDLYVRIDASSDIDAKHGQGKNVILKVSITLSMTLLTLFTISYIYITKAKHKGKNLQGGHENFELPQFDISSILKATNNFSFDNKLGEGGFGPVYKGTMIDGQIIAVKRLSENSEQGLIEFKNEFILCTKLQHRNLVRVLGCCIEGEEKILLYEYMPKRSLDLFIFDPVQSKLLDWSMRFNILHGVARGLQYLHQDSRLRIIHRDLKASNILLDNEMNPKISDFGLAKMFGGDQIEGKTRRIVGTHGYMAPEYVIHGLFSIKSDVFSFGVLLLEVISGKKNRSLTYHEHEHDHNLLWHASRLWRGGVPHELIDIGLKDTCVQHEALRCIQIGLLCVQHVPDYRPNISHVIMMLGSESTLPQPKEPGFLIEMITTKEQSFSKRQTSSMNEVTLSILSSR* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1478 817 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 32 811 - -
Psa2g1478 817 PIRSF SRK 1 817 IPR024171 GO:0004674
Psa2g1478 817 Pfam S-locus glycoprotein domain 214 323 IPR000858 GO:0048544
Psa2g1478 817 CDD STKc_IRAK 505 772 - -
Psa2g1478 817 Gene3D - 18 153 IPR036426 -
Psa2g1478 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Psa2g1478 817 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 811 - -
Psa2g1478 817 Pfam Domain of unknown function (DUF3403) 775 817 IPR021820 GO:0004674
Psa2g1478 817 Pfam Protein tyrosine and serine/threonine kinase 500 700 IPR001245 GO:0004672|GO:0006468
Psa2g1478 817 SMART ntp_6 347 426 IPR003609 -
Psa2g1478 817 Gene3D Phosphorylase Kinase; domain 1 461 574 - -
Psa2g1478 817 CDD PAN_AP_plant 343 426 - -
Psa2g1478 817 ProSiteProfiles PAN/Apple domain profile. 344 427 IPR003609 -
Psa2g1478 817 ProSiteProfiles Bulb-type lectin domain profile. 24 144 IPR001480 -
Psa2g1478 817 Pfam D-mannose binding lectin 71 182 IPR001480 -
Psa2g1478 817 SMART serkin_6 499 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa2g1478 817 CDD B_lectin 32 156 IPR001480 -
Psa2g1478 817 Gene3D Transferase(Phosphotransferase) domain 1 575 782 - -
Psa2g1478 817 Pfam PAN-like domain 344 412 IPR003609 -
Psa2g1478 817 SMART blect_4 30 156 IPR001480 -
Psa2g1478 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 187 IPR036426 -
Psa2g1478 817 SUPERFAMILY Protein kinase-like (PK-like) 482 776 IPR011009 -
Psa2g1478 817 ProSiteProfiles Protein kinase domain profile. 499 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1478 Psa-Chr2 112487569 112521346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1478 443 789 Receptor kinase-like Gene Family AT4G23230 54.261 3.81e-123 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa2g1478 PK_Tyr_Ser-Thr 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1478 - - gmx:100790436 1051.97