Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1454 AAGAGGCTTTTAACATGTTCAATTTGATGCGGTTGGATGTTGCGAACGGGGACGAGTTCACTTTTAGTAGCATGTTGAGTGTACTAAGTGATGATGCTTTGGGATATTATGATTTTGGAAAAACAGATTCACGAGTATTCGACGAGATGTCGATTCGAAATGTTGTGGCATGGAACACCATGGTTGTTGGGTGTGGAAATTATGGTGATGGCAATGAAGTTATGAGGCTTCTCAGAGAGATGCTTCGGGAAGGGTTTCTTCCCGATGAATTGACTATTTCCAGCGTCATTAGTTCATGTGGCTACGCTTCTGCCATTACCGAAACACTTCAAGCACATGCTTTTGCGGTTAAGTTATCGTGTCATCCTGATCTAGTTGCTTGGACTTCATTGATATGTGCATATGCATTCCACGGACTAGCCAAAGAAGCTACAGGTGATGTTTACATGTGGGACGGGAAGAAAGGTAAGGATAAGCCGCTTGTTGCGACTCGGATGCCGGGTGTAAAGGAGGCTACTTCAGTTTCAGTTGGTGAAACACATTTATTAATTGTGGCTTCCCTGTATCATCCTGTCTACCCTATCAACATGATTGATAATTCTCAGAAGCTCAAGTCGAGTGACATAAATAACATGGAGGAGTTCAACGAAGACATTTTATTTGAGGATACCAATTCCTATAATACAATATATACAGTTCAAAATGATAATCTTAGACAGAGATCTACATCCAGCTTAAAAAATGATTTGAAGAAATATTGCGAGGACATTGTCATGCGCAATCTTGATTATATATTTTCAGTTTCAGCACATGCTGTAGCAAGTGCCTCACTAGATATTTTGGCGAGCCTCGAAGGGTTGTTAGACCAGAGATCATCCGAGGCATGGAGTTACCGTCGACTCCCTACTCCAACTGCTATACTCCCCGTCACCATTGACAGTGAAGAGGAAGATGAAAAAGTTCCTGATTCCGCTGGAGCAAAAGTTAACGGTGAATCCGGAAAGAAGGGCTATGTTGGGATCCACAGTTCAGGATTCAGAGACTTTCTTCTAAAGCCAGAGCTTCTACGGGCTATTGTGGATTCAGGATTTGAGCATCCTTCTGAAGTACAACATGAATGCATACCTCAAGCAATCTGGGGAATGGGTGTTTTATGCCAAGCAAAATCTGGAATGGGAAAAACTGTTGTTTTTGTTTTATCAACTTTGCAGCAGATTGATCCTATTCCAGGCCAAGTTTCTGCTCTTATTCTGTGTCATACAAGGGAATTAGCTTACCAGATATGCCATAAGTCTGAAAGGTTCAGCACCTACTTGACTGATCTCAAGGTTGTTGTCTTCTATGTTGGTGTCAACATTAAAGTTCACAAGGATCTGTTGAAAAATGAATGTCCCCAAATTGTTGTTGGTACACCTGGAAGAATACTAGCATTGTCCAGGGATAAGGACCTTTCTTTGAAGAATGTCAAGCATTTCATTTTAGATGAATGTGATAAGATGCTGGAATCACTTGACATGAGGAAAGACGTGCAAGACATTTTCAAGTTGACTCCCCACGATAAGCAAGTTATGATGTTTTCTGCAACGCTTAGCAAGGAAATCCGCCCGGTCTGCAAAAAATTTATGCAAGATCCCATGGAAATTTATGTTGACGACGAAGCAAAATTGACCCTTCATGGTCTTGTTCAGCACTACATCAAATTGAAGGAGGAGGAGAAAAAACCGGAAGTTGAATGA 1736 0.4136 EAFNMFNLMRLDVANGDEFTFSSMLSVLSDDALGYYDFGKTDSRVFDEMSIRNVVAWNTMVVGCGNYGDGNEVMRLLREMLREGFLPDELTISSVISSCGYASAITETLQAHAFAVKLSCHPDLVAWTSLICAYAFHGLAKEATGDVYMWDGKKGKDKPLVATRMPGVKEATSVSVGETHLLIVASLYHPVYPINMIDNSQKLKSSDINNMEEFNEDILFEDTNSYNTIYTVQNDNLRQRSTSSLKNDLKKYCEDIVMRNLDYIFSVSAHAVASASLDILASLEGLLDQRSSEAWSYRRLPTPTAILPVTIDSEEEDEKVPDSAGAKVNGESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAIWGMGVLCQAKSGMGKTVVFVLSTLQQIDPIPGQVSALILCHTRELAYQICHKSERFSTYLTDLKVVVFYVGVNIKVHKDLLKNECPQIVVGTPGRILALSRDKDLSLKNVKHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKKPEVE* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1454 577 CDD DEADc_DDX39 342 549 - -
Psa2g1454 577 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 53 87 IPR002885 -
Psa2g1454 577 SMART ultradead3 362 563 IPR014001 -
Psa2g1454 577 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 324 573 - -
Psa2g1454 577 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 324 573 - -
Psa2g1454 577 TIGRFAM PPR: pentatricopeptide repeat domain 55 89 IPR002885 -
Psa2g1454 577 Pfam PPR repeat family 52 99 IPR002885 -
Psa2g1454 577 Pfam DEAD/DEAH box helicase 368 533 IPR011545 GO:0003676|GO:0005524
Psa2g1454 577 Gene3D Tetratricopeptide repeat domain 1 173 IPR011990 GO:0005515
Psa2g1454 577 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 374 547 IPR014001 -
Psa2g1454 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 550 IPR027417 -
Psa2g1454 577 Gene3D - 339 555 IPR027417 -
Psa2g1454 577 Pfam PPR repeat 125 143 IPR002885 -
Psa2g1454 577 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 343 371 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1454 Psa-Chr2 108823633 108825646 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1454 319 572 Eukaryotic Initiation Factors Gene Family AT5G11200 75.932 5.25e-154 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1454 K12812 - gmx:100796232 481.1