Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1452 CCTGATCTAGTTGCTTGGACTTCATTGATATGTGCATATGCATTCCACGGACTAGCCAAAGAAGCTACAGGTGATGTTTACATGTGGGACGGGAAGAAAGGTAAGGATAAGCCGCTTGTTGCGACTCGGATGCCGGGTGTAAAGGAGGCTACTTCAGTTTCAGTTGGTGAAACACATTTATTAATTGTGGCTTCCCTGTATCATCCTATCTACCCTATCAACATGATTGATAATTCTCAGAAGCTCAAGTCGAGTGACATAAATAACATGGAGGAGTTCAACGAAGACATTTTATTTGAGGATACCAATTCCTATAATACAATATATACAGTTCAAAATGATAATCTTAGACAGAGATCTACATCCAGCTTAAAAAATGATTTGAAGAAATATTGCGAGGACATTGTCATGCGCAATCTTGATTATATATTTTCAGTTTCAGCACATGCTGTAGCAAGTGCCTCACTAGATATTTTGGCGAGCCTCGAAGGGTTGTTAGACCAGAGATCATCCGAGGCATGGAGTTACCGTCGACTCCCTACTCCAACTGCTATACTCCCCGTCACCATTGACAGTGAAGAGGAAGATGAAAAAGTTCCTGATTCCGCTGGAGCAAAAGTTAACGGTGAATCCGGAAAGAAGGGCTATGTTGGGATCCACAGTTCAGGATTCAGAGACTTTCTTCTAAAGCCAGAGCTTCTACGGGCTATTGTGGATTCAGGATTTGAGCATCCTTCTGAAGTACAACATGAATGCATACCTCAAGCAATCTGGGGAATGGGTGTTTTATGCCAAGCAAAATCTGGAATGGGAAAAACTGTTGTTTTTGTTTTATCAACTTTGCAGCAGATTGATCCTATTCCAGGCCAAGTTTCTGCTCTTATTCTGTGTCATACAAGGGAATTAGCTTACCAGATATGCCATGAGTCTGAAAGGTTCAGCACCTACTTGACTGATCTCAAGGTTGTTGTCTTCTATGTTGGTGTCAACATTAAAGTTCACAAGGATCTGTTGAAAAATGAACGTCCCCAAATTGTTGTTGGTACACCTGGAAGAATACTAGCATTGTCCAGGGATAAGGACCTTTCTTTGAAGAATGTCAGGCATTTCATTTTAGATGAATGTGATAAGATGCTGGAATCACTTGACATGAGGAATGACGTGCAAGACATTTTCAAGTTGACTCCCCACGATAAGCAAGTTATGATGTTTTCTGCAACGCTCAGCAAGGAAATCCGCCCGGTCTGCAAAAAACTTATGCAAGATCCCATGGAAATTTATGTTGACGACGAAGCAAAGTTGACCCTTCATGGTCTTGTTCAGCACTACATCAAATTGAAGGAGGAGGAGAAAAAACCGGAAGTTGAATGA 1371 0.4143 PDLVAWTSLICAYAFHGLAKEATGDVYMWDGKKGKDKPLVATRMPGVKEATSVSVGETHLLIVASLYHPIYPINMIDNSQKLKSSDINNMEEFNEDILFEDTNSYNTIYTVQNDNLRQRSTSSLKNDLKKYCEDIVMRNLDYIFSVSAHAVASASLDILASLEGLLDQRSSEAWSYRRLPTPTAILPVTIDSEEEDEKVPDSAGAKVNGESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAIWGMGVLCQAKSGMGKTVVFVLSTLQQIDPIPGQVSALILCHTRELAYQICHESERFSTYLTDLKVVVFYVGVNIKVHKDLLKNERPQIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRNDVQDIFKLTPHDKQVMMFSATLSKEIRPVCKKLMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKKPEVE* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1452 456 Pfam DEAD/DEAH box helicase 247 412 IPR011545 GO:0003676|GO:0005524
Psa2g1452 456 SMART ultradead3 241 442 IPR014001 -
Psa2g1452 456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 429 IPR027417 -
Psa2g1452 456 CDD DEADc_DDX39 221 428 - -
Psa2g1452 456 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 203 452 - -
Psa2g1452 456 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 203 452 - -
Psa2g1452 456 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 222 250 IPR014014 GO:0003724
Psa2g1452 456 Gene3D - 218 434 IPR027417 -
Psa2g1452 456 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 253 426 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1452 Psa-Chr2 108803271 108804729 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1452 198 451 Eukaryotic Initiation Factors Gene Family AT5G11200 75.932 1.12e-153 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1452 K12812 - gmx:100796232 474.937