LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa2g1446	ATGGATGGATCTGACATGCCTTGGGATTACTACCAAAGGGAGATGAGACTTCTTAAGGGCATCTCCCTTAAGTCTCTTACCAGTCAGTGCGGGTCAAGCTTGGTTTCCTTCTCTATGACTCATTCCTTGCCGATAACAAATAGCGCCGTCGCAATGGGAAGAAGACCTGCAAGATGTTACCGTCAAATTAAAAACAAGCCATATCCAAAGTCACGATTCTGTCGTGGTGTTCCTGATCCCAAGATCAGGATCTACGATGTTGGCATGAAGAAGAAGGGTGTTGACGAGTTCCCTTTCTGTGTCCATCTTGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACTAAGTTTGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGGGTTCACCCATTCCATGTTCTTAGGATTAACAAGATGCTTTCCTGTGCTGGAGCTGATAGGCTTCAGACTGGTATGCGAGGTGCTTTTGGAAAGCCACAGGTGCTTCTCTCTGTTCGCTGCAAGGATAGCAACGGCCAAAATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATTGTCAGCAGGAAGTGGGGATTCACCAAGATTGATCGAAATGATTACTTGAAGTTGAAGTCAGAGAACAGGATTTTGAATGATGGTGTCAATGCTAAGCTTCTTGGGTGCCATGGACCTTTGGCTAACCGTCAACCTGGAAGAGCTTTTATTAATGCTAGCTGCAACGCCTAG	792	0.4621	MDGSDMPWDYYQREMRLLKGISLKSLTSQCGSSLVSFSMTHSLPITNSAVAMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQVLLSVRCKDSNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKIDRNDYLKLKSENRILNDGVNAKLLGCHGPLANRQPGRAFINASCNA*	264

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa2g1446	263	Pfam	Ribosomal protein L16p/L10e	63	207	IPR016180	GO:0003735\|GO:0005840\|GO:0006412
	Psa2g1446	263	PANTHER	60S RIBOSOMAL PROTEIN L10	52	260	IPR001197	GO:0003735\|GO:0005840\|GO:0006412
	Psa2g1446	263	Gene3D	Ribosomal protein L10e/L16	52	259	IPR036920	GO:0003735\|GO:0005840\|GO:0006412
	Psa2g1446	263	PANTHER	60S RIBOSOMAL PROTEIN L10-LIKE	52	260	-	-
	Psa2g1446	263	TIGRFAM	uL16_euk_arch: ribosomal protein uL16	52	215	IPR001197	GO:0003735\|GO:0005840\|GO:0006412
	Psa2g1446	263	CDD	Ribosomal_L16_L10e	92	207	IPR016180	GO:0003735\|GO:0005840\|GO:0006412
	Psa2g1446	263	SUPERFAMILY	Ribosomal protein L16p/L10e	55	214	IPR036920	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa2g1446	Psa-Chr2	108337218	108340483	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa2g1446	52	260	Cytoplasmic Ribosomal Protein Gene Family	AT1G66580	82.648	2.58e-133	374

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa2g1446	K02866		-	csin:114279382	404.831