Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1431 ATGGGTAGGCGGAAAAATAAACCACGTCGATCGGGTGGGATAATAGTAGAAACAAATGGTACTACGGAAACAGAATTGGATAAAGATAATATTGTAGAAGCGGGAGAAGAAGAAAAACGTAATTTTGATGATATTGATAAACCGTATGTTGTTGAAGTTGACCGCTCTGGTTGGTTGTCAGATGAACACCTTGATATTTCTGAAGTTGTTCTTAGGGATTTAAATATAAGAGAAGGTTTTAATGGTTTTGAACTGTCTGAAGATTTTTCTCAGGATCCCCAATTCTCGTTAAGATTTCGGTTATGTAATGTCGGTAATGTTCTTGGTCGAATCAAACTTGGCCATTGGCCTGTATTACCTTACACCGATATTCATTTAGAGTTTGTTAGAAGAGCTACAACTGACAATAGTGAAACATGCACAGTGATGTTATCGGGTATTTTTGATGGACCTGATGAAGGTGTTTCTGGTCTTGTTCATTTGACGAGTTTGAAATTTGTTACATTGAGGGTGGTTCCTGGGATTAGGCTTTCTGAGGACATACCTTCCCTGAGGGTGAGGGTTGAGGTACTAAAGAGTGCCTTCAATGCATGTGAGTCGCTTCTTGAGAGTTCTAGACAGCTATGGAAAAAGAGTATGATGAATGTCATGTCTTGGTTACGACCAGAAATGATGACTTCAGAGGTTAGGTATGGGTTAAGTAGCTATATGGAAATGGAAGTTGATTCGCAGACAGACATGGAAGACAACGGGAGCTATGAAGGGGAATGCTCAAGGTTCGATCCTGCTGGTTTTTATGAAGCCATTAAGCCTTCAAAAGCAGAGCCAATGCTTGAAGATGACATACCTGAGTTACTTCCTGAACTTCGGCCATATCAACGGCGTGCAGCTTTTTGGATGGTAAAACGAGAAAAAGCAATGGAAGAAAGTCAGATTGAAAGAGAAATAAATCAATTTCATTCTCCATTATGTGTGGCGGTTGATTTTCTGGACACAAGCTCTAAAATGTTTTTCAATCCGTTCAGTGGAAATATTTCTTTGTGCCCAGAGACTTCTTCACCTTATGTATTCGGAGGCATTCTTGCTGATGAGATGGGATTAGGAAAAACTGTAGAATTGCTTGCCTGCATCTTTGCTCACCGTAGATCAGCAAATGGAAGCGACACACTAATTGACTCAGTTCCCCAAGTCAATGGCAACGAAAAAGCCGCTTTAAAAAGACTTAAAAGAGAGCGCGTGGAGTGCATATGTGGAGCTGTCAGCGAAAGTCTCCAATATGAAGGACTATGGGTTCAATGTGACGTTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCGCCTAAAGGAAAGTCACTGAAATCAAAACAAGGATTGGAAAGCAAGACACATAAAACTACTATAGCTTTGAGGAATGGGGAATATGTATGTCAAATGTGCTCTGAACTAATGCAAGCTACTGAATCTCCTATCGCCTCTGGTGCTACACTCATTGTTTGCCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATTCGTCATACACGTCCAGGAGCCCTGAAAACTTGTATTTATGAAGGTGCGCGTGAAACATCTTTCTCCAATTCAACTTCAATGGATATCGATGATCTTGCCAGTGCAGACATCGTAATCACTACATATGATGTGCTTAAAGAGGATTTGTCCCATGACTCTGATAGACATATAGGTGATCGACATCTTTTGAGGTTTCAAAAAAGGTACCCAGTTATCCCAACTCTTCTTACCAGAATATATTGGTGGAGGATTTGTTTGGATGAGGCTCAAATGGTGGAGAGCACTGTTGCTACCGCTGCAACTGAAATGGCTCTTAGACTCCATTCCAAGCATCGTTGGTGCGTTACAGGAACCCCAATTCAGCGAAAGCTTGATGACTTATATGGACTTTTAAGGTTCAGTAAAACTAGTCCTTTCAATATATACAGATGGTGGAGTGAAGTTATTCGAGATCCTTACGAGAAGGGAGATATGGGAGCTATGGAATTTACACACAGAATTTTCAAACAAATCATGTGGCGTTCTTGTAAACAACATGTTGCAGATGAATTGGAACTTCCTTCACAAGAGGAGTGCCTCTCTTGGCTTACACTATCACCAGTAGAAGAGCACTTTTACCAGAGGCAACATGAAGCTTGTGTTAGAGATTCCCATGAGTTTATCGAAAGTTTGAGAAATGATATTCTTAATAGAAAAGTCCCAGATTCTGTAGCTTTGAATGGTTTGTCTGATCCTTCAATGACCCAAACGGAGGCAAGGAAGCTATTGGATGCTTTGCTGAAGCTTCGCCAGGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGGTTGCGATCCCTGCACCAGTCTCCTATGACAATGGAGGAAGTACTAATGGTCCTTATAAGCAAGACCAAGGTAGAAGGTGAGGAAGCTCTCAGGAGGTTAGTTATCGCTCTGAATGCACTTGCCGCAATCATTACAATACAAAAAGATTTTTCTCAAGCTGCTTTGCTGTACATTGAAGCTCTTACTTTTGCTGAAGAGCATTCTGAAGATTTCCGCCTTGATCCTTTGTTAAATATTCACATTCATCATAATCTTGCTAATATATCCCCGTTGGCTGAGAATTTTTCTTTGATCTTGCCATCCAAACGAAAGCAAGTGTCTGGCACTTCTGCAATTAATACAACCAAAAGGCATTCTCTTGCAAAGGTTGATCATGATCATGTGAAGAGGCACAAAATAAGTAACTGCGATAACATAACTTCTGCAGAACCATCAAATGTTGAATCTAGCCTTTCAGAAAATGACTTAAATGATAGAGAATTTGATGATTTGTCTGCAAGTTCCGTCAAATATCTGATAACAGAGTGCGAAGATTTAAAACTTAAATATTTATCTGTGTTCAGTTCAAAGCTAACTACAGCTCAACAGGAGTTTCAAAGTTCTTACATGCAGGTTTGTAACTTATATCGTGACACCAGAAAAAATCAAAATACACTTTGGTGGTTAGAAGCACTTCATAATGCTGAGCAGAACAAGGATTTCTCAACCGAGTTGCTTAGAAAGATTGAAGAAGCCATCTCAGGAAATTCAAACAATTCAAAATCGTCACGAGTAGCTACTCGTTTTCGGAGCATAAGCTCTCTGAAGTATCAAATTCAAACCAGTTTGGATCAGTTAGAAGCCTCTAGGAAAGTGCTATTAGATCGTTTGTTAGAAATCGATGAGACAATGGAAAAACCAAATGATGAAGATATTGAGCGTGTTGGTAAATGTCGAAATTGTCAACCTAATTGTGATGGCCCCCCATGCCTTCTGTGTGAACTAGATGAATTGTTTCAGAACTATGAAGCTAGACTCTTTGTTCTCAAGGATGAACGTGGAGGGCTAATTTCATCTGCTGAGGAAGCAGTAGGTTTTAAAAAGAAAATATTTGCACGTAATCAATTCCTCGCAAAGCTATCAAAGTCTAATCACAGTTCATCAGTATCTGATATTGATTATGATGAGTCTGGAAAAAGGAATGTTGGACAAAGAGTTATGGCTTCGAGATCGGCATCTATGCTGGAGGTTCTTCTTGGAGTTATAAAGAACTATTGCAAGACTCAGTTTGGAAAGGACAGTATCTCAGCAGCCACCAAGCATTTACATATTTTGGAGGGAATGCGAAAGGAGTTTGTTTATGCAAGGTCTTTGGCATTAGCTCAAGATCAATATCTGCGAGCCCATGATGAAATAAAGATGGCGGTTTCTCGTTTACACCTAAGGGCAAATGAAGATGATAAATCTCTTGATTCTCTAGGTGAAAATGAATTATATGCGGCTAGCTCAAACTTTTCCCAGGAGAAGTTTATGTCATTGGCCTTGTTGTCACAGATAAAAGGAAAGCTACGCTACTTAAAGGGTTTGGTTCAGTCTAAGCAAAAACTGCCATTGGAAAGTCCAGTTAACTCTTCATGCACTCAAGACACAAATGCTATGTCAAATTCTACAGAAGAGAAGGGTGAACTCATATCTAAAACTTATGAGGAAACATGCCCAATTTGCCAAGAAAAGCTAGGCCATCAGAGAATGGTGTTTCAATGTGGGCACGTTACCTGCTGTAAATGTTTATTTGCTATGACTGAGAAGAGGCTTCAACATAGCAAGACTCATAATTGGGTGATGTGCCCTACATGTCGACAGCATACTGATTTTGGAAACATTGCCTATGCTGTTGATGCACAAAAGGAATCTCCCAATTCATCAATGCTGCATACACCTGACAGCTGTGGAAAACATGAATCATCCATTACTGTCAAAGGCTCGTATGGAACCAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGATTAAGGCTGCAAATCATAAATCAAAAGTTCTTGTATTTTCAAGTTGGAAAGATGTACTTGATGTACTGGAACATGCCTTTGCCACCAATAACATCACCTTCATCCGGATGAACGGAGGCAGGAAAGCTCACACCGCCATCAGTCAATTTAGAGGAAAACAGAATGACTCAAAAGGATGTGAGGGGTCAGAACCAAAATCTATTCAGGTGTTGTTGCTTTTAATCCAACATGGAGCCAATGGTCTTAATCTTTTGGAAGCACAACATGTGGTCCTTGTAGAGCCATTACTCAATCCAGCTGTTGAAGCACAAGCAATCAGTCGTGTACATCGTATTGGTCAAAGGAATAAGACCCTCATTCATCGTTTCTTAGTAAAAGACACAGTCGAAGAGAGCATATATAAATTGAACAGAAGCAGAAGCAACCACTCATTCATCAGTGGCAACACAAAAAATCAAGATCAACCTGTTTTGACCTTTAAGGACGTGGAATGCTTGCTGGCAAGAGCACCTCTAATGGCACCAGAAACCGATGAAAATCCTAATACAAATACAAACCTGAGAGACTTTCCTCCATCAATTGCGGCAGTTATAGCTGCTGAGAGAAGACTTCATGAGCAAAGAACATGA 5004 0.4025 MGRRKNKPRRSGGIIVETNGTTETELDKDNIVEAGEEEKRNFDDIDKPYVVEVDRSGWLSDEHLDISEVVLRDLNIREGFNGFELSEDFSQDPQFSLRFRLCNVGNVLGRIKLGHWPVLPYTDIHLEFVRRATTDNSETCTVMLSGIFDGPDEGVSGLVHLTSLKFVTLRVVPGIRLSEDIPSLRVRVEVLKSAFNACESLLESSRQLWKKSMMNVMSWLRPEMMTSEVRYGLSSYMEMEVDSQTDMEDNGSYEGECSRFDPAGFYEAIKPSKAEPMLEDDIPELLPELRPYQRRAAFWMVKREKAMEESQIEREINQFHSPLCVAVDFLDTSSKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRRSANGSDTLIDSVPQVNGNEKAALKRLKRERVECICGAVSESLQYEGLWVQCDVCDAWQHADCVGYSPKGKSLKSKQGLESKTHKTTIALRNGEYVCQMCSELMQATESPIASGATLIVCPAPILPQWHDEIIRHTRPGALKTCIYEGARETSFSNSTSMDIDDLASADIVITTYDVLKEDLSHDSDRHIGDRHLLRFQKRYPVIPTLLTRIYWWRICLDEAQMVESTVATAATEMALRLHSKHRWCVTGTPIQRKLDDLYGLLRFSKTSPFNIYRWWSEVIRDPYEKGDMGAMEFTHRIFKQIMWRSCKQHVADELELPSQEECLSWLTLSPVEEHFYQRQHEACVRDSHEFIESLRNDILNRKVPDSVALNGLSDPSMTQTEARKLLDALLKLRQACCHPQVGSSGLRSLHQSPMTMEEVLMVLISKTKVEGEEALRRLVIALNALAAIITIQKDFSQAALLYIEALTFAEEHSEDFRLDPLLNIHIHHNLANISPLAENFSLILPSKRKQVSGTSAINTTKRHSLAKVDHDHVKRHKISNCDNITSAEPSNVESSLSENDLNDREFDDLSASSVKYLITECEDLKLKYLSVFSSKLTTAQQEFQSSYMQVCNLYRDTRKNQNTLWWLEALHNAEQNKDFSTELLRKIEEAISGNSNNSKSSRVATRFRSISSLKYQIQTSLDQLEASRKVLLDRLLEIDETMEKPNDEDIERVGKCRNCQPNCDGPPCLLCELDELFQNYEARLFVLKDERGGLISSAEEAVGFKKKIFARNQFLAKLSKSNHSSSVSDIDYDESGKRNVGQRVMASRSASMLEVLLGVIKNYCKTQFGKDSISAATKHLHILEGMRKEFVYARSLALAQDQYLRAHDEIKMAVSRLHLRANEDDKSLDSLGENELYAASSNFSQEKFMSLALLSQIKGKLRYLKGLVQSKQKLPLESPVNSSCTQDTNAMSNSTEEKGELISKTYEETCPICQEKLGHQRMVFQCGHVTCCKCLFAMTEKRLQHSKTHNWVMCPTCRQHTDFGNIAYAVDAQKESPNSSMLHTPDSCGKHESSITVKGSYGTKIEAVTRRILWIKAANHKSKVLVFSSWKDVLDVLEHAFATNNITFIRMNGGRKAHTAISQFRGKQNDSKGCEGSEPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAVEAQAISRVHRIGQRNKTLIHRFLVKDTVEESIYKLNRSRSNHSFISGNTKNQDQPVLTFKDVECLLARAPLMAPETDENPNTNTNLRDFPPSIAAVIAAERRLHEQRT* 1668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1431 1667 Coils Coil 1014 1034 - -
Psa2g1431 1667 Pfam Helicase conserved C-terminal domain 1450 1571 IPR001650 -
Psa2g1431 1667 ProSiteProfiles Zinc finger RING-type profile. 1354 1402 IPR001841 -
Psa2g1431 1667 Gene3D - 1425 1626 IPR027417 -
Psa2g1431 1667 Pfam PHD-finger 415 483 IPR019787 -
Psa2g1431 1667 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1641 - -
Psa2g1431 1667 Pfam SNF2-related domain 292 785 IPR000330 GO:0005524|GO:0140658
Psa2g1431 1667 CDD SF2_C_SNF 1445 1582 - -
Psa2g1431 1667 SMART ring_2 1354 1401 IPR001841 -
Psa2g1431 1667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 269 688 IPR027417 -
Psa2g1431 1667 CDD DEXQc_SHPRH 289 689 - -
Psa2g1431 1667 MobiDBLite consensus disorder prediction 1 20 - -
Psa2g1431 1667 SUPERFAMILY FYVE/PHD zinc finger 411 484 IPR011011 -
Psa2g1431 1667 SMART ultradead3 285 658 IPR014001 -
Psa2g1431 1667 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1451 1622 IPR001650 -
Psa2g1431 1667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1338 1422 IPR013083 -
Psa2g1431 1667 SMART helicmild6 1479 1571 IPR001650 -
Psa2g1431 1667 SMART PHD_3 414 482 IPR001965 -
Psa2g1431 1667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 458 IPR013083 -
Psa2g1431 1667 CDD PHD_TCF19_like 416 481 - -
Psa2g1431 1667 SUPERFAMILY RING/U-box 1349 1406 - -
Psa2g1431 1667 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Psa2g1431 1667 Gene3D - 467 710 IPR038718 -
Psa2g1431 1667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 1608 IPR027417 -
Psa2g1431 1667 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 465 651 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1431 Psa-Chr2 107499516 107514767 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1431 489 783 RAD5 or RAD16-like Gene Family AT5G22750 31.333 1.47e-34 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa2g1431 SNF2_N 2.6e-85 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1431 K15710 - gmx:100776659 2662.49