Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa2g1414 | ATGATAGACCATTTACGCAATTCTATGTCGGAGGATTTGGATGATCTTGCTATTTTAATCCTCGATGAAGCTGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCAGGAACTTGTTCGTGTGTGTCCCCGAAAAAGGCAGACCATGCTTTTTTCAACAACCATGACCGAGGAGGTTAATGATCTTATTAAACTTTCCCTATCAAAACCACTGCGTCTTTCTGCTGATCCATCTGCAAAACGACCAGCATCCTTGACTGGGGAGGTGGTTAGAATAAGAAGAATGCGCGAAGTCAACCAGGAAGCAGTTCTTCTAGCAATGTGCACCAAAACTTTTACTTCTAAAGTGATCATTTTCAGTGGAACTAAGCAATCATGCATCAAGGGACTGGTTGCACGAGAATTGAGGGAGGGACCACCAAGCGGGGGTGAGGACAGAAAACCTCCAAACGTCTTCCGTTCAAACATTTCCCACTACTCTGAGGAAACACAGCAACACAGCTGA | 507 | 0.4418 | MIDHLRNSMSEDLDDLAILILDEADRLLELGFSAEIQELVRVCPRKRQTMLFSTTMTEEVNDLIKLSLSKPLRLSADPSAKRPASLTGEVVRIRRMREVNQEAVLLAMCTKTFTSKVIIFSGTKQSCIKGLVARELREGPPSGGEDRKPPNVFRSNISHYSEETQQHS* | 169 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa2g1414 | 168 | Pfam | DEAD/DEAH box helicase | 3 | 63 | IPR011545 | GO:0003676|GO:0005524 | |
Psa2g1414 | 168 | PANTHER | RNA HELICASE | 24 | 126 | - | - | |
Psa2g1414 | 168 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 2 | 74 | IPR027417 | - | |
Psa2g1414 | 168 | PANTHER | BNAA01G17110D PROTEIN | 24 | 126 | - | - | |
Psa2g1414 | 168 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 20 | 28 | IPR000629 | - | |
Psa2g1414 | 168 | MobiDBLite | consensus disorder prediction | 138 | 168 | - | - | |
Psa2g1414 | 168 | MobiDBLite | consensus disorder prediction | 154 | 168 | - | - | |
Psa2g1414 | 168 | Gene3D | - | 1 | 81 | IPR027417 | - | |
Psa2g1414 | 168 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 74 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa2g1414 | Psa-Chr2 | 106573742 | 106575273 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa2g1414 | 19 | 120 | Eukaryotic Initiation Factors Gene Family | AT5G11170 | 29.126 | 1.98e-08 | 50.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa2g1414 | K13181 | - | gmx:100791233 | 209.149 |