Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1405 ATGGGTTCTTTATGTGATTTTTGTGGAGACCAGAGATCCTTGGTGTACTGCCGCTCTGACGCCGCTTCCTTATGTTTGTCGTGTGATCGAAACGTTCATTCTGCTAACGCACTTTCTAAGCGTCATTCAAGAACACTCGTGTGCGAGAGGTGTAATTTACAACCGGCCTATGTGAGGTGTGTTGAAGAGAAAGCTTCATTTTGCCAGAACTGTGATTGGTCGGCTCACGGTACCGATCCATCTTCTTCAACACACAAACGACAATCAATCAATTGCTACTCTGGCTGTCCTTCGGCTTCCGAGCTTTCTTCTATATGGCCCTTTTTCTCAGATATCCCTTCTATGGGCGAAGCGTGTGAGCAGAAACTCGGTTCGATGAGCATTAATGAGAACCACGACAATAAAGCCCGGGTTTCTCCAGAAAGCAAGAACGTGTCTGGCTCAGCTCAAGTCGCCGATCTTCCTAGCAAGGATAAGTCTAGGGCCGGAAAATCTTCAGTAACCGAGTCACGTGCAGAACCTTGTATTCTTGACCAGCCGCCTCGACCTTCCAATGAGTGTATGCCCAAGTTACAATGTCCCGGTAGTACGGCATCTGCACTTTGCGAAGATGATAATTTGTACGACGGTTTCAACATAGATGATATGGATCTTGAACTTGAGAACTATAAGGAAGTTTTTTCTTATGCTCTCAATAACTCCGAAGAGTTTTTCGAAAAGGGCGGTATTGATAGCTTATTCGAGAGAAAAGATATGTCTGCTAGTGCTGGTGATTCCAATTGCCGTGGCGCCATTGCAGCTTCTTCAGATTCAATGTTAAGTACTAAAACTGAACCGATACTTTACTTTACGGAAATGCAATCCCAATCAAACGTTTCATTTTCCGGCGTTATCAACGATGCTAGTGCTGGCGACAATCAAGAGTGTGGCAGTGCTTCTTCCATGCTTCTCACGGGGGAGCCTCCCTGGTGTCCTCCTTGCCTGGAGAGTTCTTCTATTCAATCTGCTAACCGCAGCAATGCTGTCATGCGCTATAAGGAAAAGAAAAAGAATCGAAAGTTTGATAAGAAAGTAAGGTATGCTTCTCGGAAGGCTAGAGCTGATGTCAGAAAACGTGTGAAGGGCCGGTTCGTTAAAGCTGGTGAAACATTCGACTATGATCCTTTAAGCGAAACCAGAAGCTTCTGA 1188 0.4537 MGSLCDFCGDQRSLVYCRSDAASLCLSCDRNVHSANALSKRHSRTLVCERCNLQPAYVRCVEEKASFCQNCDWSAHGTDPSSSTHKRQSINCYSGCPSASELSSIWPFFSDIPSMGEACEQKLGSMSINENHDNKARVSPESKNVSGSAQVADLPSKDKSRAGKSSVTESRAEPCILDQPPRPSNECMPKLQCPGSTASALCEDDNLYDGFNIDDMDLELENYKEVFSYALNNSEEFFEKGGIDSLFERKDMSASAGDSNCRGAIAASSDSMLSTKTEPILYFTEMQSQSNVSFSGVINDASAGDNQECGSASSMLLTGEPPWCPPCLESSSIQSANRSNAVMRYKEKKKNRKFDKKVRYASRKARADVRKRVKGRFVKAGETFDYDPLSETRSF* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1405 395 CDD Bbox1_BBX-like 4 47 - -
Psa2g1405 395 Pfam CCT motif 338 380 IPR010402 GO:0005515
Psa2g1405 395 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Psa2g1405 395 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 395 - -
Psa2g1405 395 SMART bboxneu5 48 90 IPR000315 GO:0008270
Psa2g1405 395 SMART bboxneu5 1 47 IPR000315 GO:0008270
Psa2g1405 395 CDD Bbox1_BBX-like 47 90 - -
Psa2g1405 395 ProSiteProfiles CCT domain profile. 338 380 IPR010402 GO:0005515
Psa2g1405 395 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 395 - -
Psa2g1405 395 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Psa2g1405 395 MobiDBLite consensus disorder prediction 133 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1405 Psa-Chr2 105544927 105549131 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1405 1 395 C2C2-CO-like Transcription Factor Family AT3G07650 53.202 7.97e-142 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Psa2g1405 CCT 4.7e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1405 - - gmx:100783016 590.112