Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa2g1397 ATGGGAGAGCGAGAGAGGGTAATGGAAGTGGAACAACAACAACAACAACAACAACAATCGGAAGAACAAGAACCAGAAACTAGCGAAACATCATCGTCAACAACAACATTAACAACAACAACAACATGGAAACAAAACCTGACAATGCAGTTATTATCTGACAAACTAACTAACGGAAACCTTAACTCTAAGATTGAAGCTGCAAGAGAAATCAGAAGAATGGTTCGTAAATCATCCAAAACCCGCTCCAAATTTGTTGCTCTTGGTGTTATTCAGCCGCTTATTTTCATGCTATCTTCTTCCAATCTTGATGCTCGTCAATCTTCTCTGCTTGCTCTTCTCAACCTTGCTGTTCGTAATGAAAGAAACAAGGTCCAAATAGTGACAGCTGGTGCAGTGCCTCCTCTGGTGGAGCTTCTCAAGATGCAAAATAACAGTATACGAGAATTGGCCACAGCAGCAATCTTGACACTCTCATCAGCTGCATCCAACAAGTCGATTATTGCTGCTTCCGGAGCTGCTCCTCTCCTTGTTCAGATTCTCAAATCCGGAAGTGTCCAAAGCAAAGTTGATTCTGTTACAACCCTCCATAATCTCTCCATCAGCATTGAAAATTCCATCGAACTTCTTGACGCTAGTGCCGTTTCCCCTCTCATCAACCTCCTTAAAGACTGTAAAAAGTACTCAAAGTTTGCAGAAAAAGCTACATCACTACTTGAAATCCTCTCCAACTCTGAAGAGGGACGGATCGCAATCTCACTTGCAGACGGGGGAATTTTAACCATTGTAGAGACAGTTGAAGACGGATCACTTGTCAGCACAGAGCACGCCGTTGGAGCATTGCTATCATTATGTCTAAGCTGCCGGGATAAATATCGGGAACTAATTCTTAAAGAAGGAGCAATTCCAGGTCTGTTACGGCTAACAGTAGAGGGCACAGTGAAAGCTCAAGATAAAGCTCGCGCGCTTCTAGATTTGCTCCGAGATTCTCCTGAAGAAAAAAAACTAGACTCGTCGGTTTTGGAGAAAATTGTTTACGACATTGCTGAACGGTTAGATAGAGTAGATAAAGCCGGCGAAACTTCCAAATGA 1092 0.4277 MGERERVMEVEQQQQQQQQSEEQEPETSETSSSTTTLTTTTTWKQNLTMQLLSDKLTNGNLNSKIEAAREIRRMVRKSSKTRSKFVALGVIQPLIFMLSSSNLDARQSSLLALLNLAVRNERNKVQIVTAGAVPPLVELLKMQNNSIRELATAAILTLSSAASNKSIIAASGAAPLLVQILKSGSVQSKVDSVTTLHNLSISIENSIELLDASAVSPLINLLKDCKKYSKFAEKATSLLEILSNSEEGRIAISLADGGILTIVETVEDGSLVSTEHAVGALLSLCLSCRDKYRELILKEGAIPGLLRLTVEGTVKAQDKARALLDLLRDSPEEKKLDSSVLEKIVYDIAERLDRVDKAGETSK* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa2g1397 363 MobiDBLite consensus disorder prediction 1 40 - -
Psa2g1397 363 Gene3D - 169 352 IPR011989 -
Psa2g1397 363 MobiDBLite consensus disorder prediction 11 40 - -
Psa2g1397 363 SMART arm_5 161 201 IPR000225 GO:0005515
Psa2g1397 363 SMART arm_5 119 160 IPR000225 GO:0005515
Psa2g1397 363 SMART arm_5 202 244 IPR000225 GO:0005515
Psa2g1397 363 SMART arm_5 78 118 IPR000225 GO:0005515
Psa2g1397 363 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 213 257 IPR000225 GO:0005515
Psa2g1397 363 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 89 131 IPR000225 GO:0005515
Psa2g1397 363 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 131 173 IPR000225 GO:0005515
Psa2g1397 363 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 29 353 - -
Psa2g1397 363 PANTHER U BOX DOMAIN-CONTAINING 29 353 - -
Psa2g1397 363 Pfam Armadillo/beta-catenin-like repeat 120 159 IPR000225 GO:0005515
Psa2g1397 363 Gene3D - 46 168 IPR011989 -
Psa2g1397 363 SUPERFAMILY ARM repeat 48 333 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa2g1397 Psa-Chr2 104991694 104995142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa2g1397 36 329 U-box Gene Family AT3G54790 37.627 2.18e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa2g1397 K08332 - gmx:100782472 478.018